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The map label for this gene is soxS [C]

Identifier: 218691129

GI number: 218691129

Start: 3411855

End: 3412064

Strand: Reverse

Name: soxS [C]

Synonym: ECED1_3474

Alternate gene names: 218691129

Gene position: 3412064-3411855 (Counterclockwise)

Preceding gene: 218691130

Following gene: 218691106

Centisome position: 65.5

GC content: 30.48

Gene sequence:

>210_bases
ATGAACGCTACTATAAAAAACAGCTCTGATATCAATGAGTTTGCTAAATGGATTGATGAAAATCTTGAGGTAGAACTCTC
AATAAATATTGAGGCAAAAAAAGCTGGATATTCAAAATGGTATTTACAGAGATTGTTTAAACATATCATTGGTATTTCTA
TTGGTAGGTATATTAATAAATGCAGCAGAAGAACTACGTTCTACTACTGA

Upstream 100 bases:

>100_bases
GGGCGAAGTTGCATTCTGCAACCTGATGATAAATCCCTTTTCAGAGAGGGTTGCATAGTACTGGAGTTGACCCAATCAAC
CTTCACAGGCATCGATAAAA

Downstream 100 bases:

>100_bases
ATCGGTCACGACTATCACTTTTAAATATCAGTTTGATTTTCAGCAGACATTTACAAGGGCATTTACTCGCCGCTTTGGTA
TAGCTCCTATTGCATACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MNATIKNSSDINEFAKWIDENLEVELSINIEAKKAGYSKWYLQRLFKHIIGISIGRYINKCSRRTTFYY

Sequences:

>Translated_69_residues
MNATIKNSSDINEFAKWIDENLEVELSINIEAKKAGYSKWYLQRLFKHIIGISIGRYINKCSRRTTFYY
>Mature_69_residues
MNATIKNSSDINEFAKWIDENLEVELSINIEAKKAGYSKWYLQRLFKHIIGISIGRYINKCSRRTTFYY

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8194; Mature: 8194

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATIKNSSDINEFAKWIDENLEVELSINIEAKKAGYSKWYLQRLFKHIIGISIGRYINK
CCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
CSRRTTFYY
HHCCCCCCC
>Mature Secondary Structure
MNATIKNSSDINEFAKWIDENLEVELSINIEAKKAGYSKWYLQRLFKHIIGISIGRYINK
CCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
CSRRTTFYY
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA