Click here to switch to the map view.

The map label for this gene is prfB

Identifier: 218691016

GI number: 218691016

Start: 3300696

End: 3301718

Strand: Direct

Name: prfB

Synonym: ECED1_3350

Alternate gene names: NA

Gene position: 3300696-3301718 (Clockwise)

Preceding gene: 218691014

Following gene: 218691020

Centisome position: 63.36

GC content: 54.06

Gene sequence:

>1099_bases
ATGTTTGAAATTAATCCGGTAAATAATCGCATTCAGGACCTCACGGAACGCTCCGACGTTCTTAGGGGGTATCTTTGACT
ACGACGCCAAGAAAGAGCGTCTGGAAGAAGTAAACGCCGAGCTGGAACAGCCGGATGTCTGGAACGAACCCGAACGCGCA
CAGGCGCTGGGTAAAGAGCGTTCCTCCCTCGAAGCCGTTGTCGACACCCTCGACCAAATGAAACAGGGGCTGGAAGATGT
TTCTGGTCTGCTGGAACTGGCTGTAGAAGCTGACGACGAAGAAACCTTTAACGAAGCCGTTGCTGAACTCGACGCCCTGG
AAGAAAAACTGGCGCAGCTTGAGTTCCGCCGTATGTTCTCTGGCGAATATGACAGCGCCGACTGCTACCTCGATATTCAG
GCGGGGTCTGGCGGTACGGAAGCACAGGACTGGGCGAGCATGCTTGAGCGTATGTATCTGCGCTGGGCTGAATCGCGTGG
TTTCAAAACTGAAATCATCGAAGAGTCGGAAGGTGAAGTGGCGGGTATTAAATCCGTGACGATCAAAATCTCCGGCGATT
ACGCTTATGGCTGGCTGCGTACAGAAACCGGCGTTCACCGCCTGGTGCGTAAGAGCCCGTTTGACTCCGGCGGTCGTCGC
CACACGTCGTTCAGCTCCGCGTTTGTTTACCCGGAAGTTGATGATGATATCGATATCGAAATCAATCCGGCGGATCTGCG
CATCGACGTTTATCGCGCATCTGGCGCGGGCGGTCAGCACGTTAACCGTACCGAATCTGCGGTGCGTATTACTCACATCC
CAACCGGGATCGTGACCCAATGCCAGAACGACCGTTCCCAGCACAAGAACAAAGACCAGGCCATGAAGCAGATGAAAGCG
AAGCTTTATGAACTGGAGATGCAGAAGAAAAATGCCGAGAAACAGGCGATGGAAGACAATAAATCCGACATCGGCTGGGG
CAGCCAGATTCGTTCTTATGTCCTTGATGACTCCCGCATTAAAGATCTGCGTACCGGGGTAGAAACCCGCAACACGCAGG
CCGTGCTGGACGGCAGCCTGGATCAATTTATCGAAGCAAGTTTGAAAGCAGGGTTATGA

Upstream 100 bases:

>100_bases
GCCAATTTAGCGTCATCTTCTCTATAAAAAAGAGCGTGGATTGGGTACAATCCCGCTCTTATCACCGCATTTTGACTAGC
TCAATAAAAGAAATCAGACC

Downstream 100 bases:

>100_bases
GGAACCAACATGTCTGAACAACACGCACAGGGCGCTGACGCGGTAGTCGATCTTAACAATGAACTGAAAACGCGTCGTGA
GAAGCTGGCGAACCTGCGTG

Product: peptide chain release factor 2

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>365_residues
MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV
SGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLR
IDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG
SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL

Sequences:

>Translated_341_residues
S*PCFQTCFDKLIQAAVQHGLRVAGFYPGTQIFNAGVIKDIRTNLAAPADVGFIVFHRLFLGIFLLHLQFIKLRFHLLHG
LVFVLVLGTVVLALGHDPGWDVSNTHRRFGTVNVLTARARCAINVDAQIRRIDFDIDIIINFRVNKRGAERRVATTAGVK
RALTHQAVNAGFCTQPAISVIAGDFDRHGFNTRHFTFRLFDDFSFETTRFSPAQIHTLKHARPVLCFRTARPRLNIEVAV
GAVIFAREHTAELKLRQFFFQGVEFSNGFVKGFFVVSFYSQFQQTRNIFQPLFHLVEGVDNGFEGGTLFTQRLCAFGFVP
DIRLFQLGVYFFQTLFLGVVV
>Mature_341_residues
S*PCFQTCFDKLIQAAVQHGLRVAGFYPGTQIFNAGVIKDIRTNLAAPADVGFIVFHRLFLGIFLLHLQFIKLRFHLLHG
LVFVLVLGTVVLALGHDPGWDVSNTHRRFGTVNVLTARARCAINVDAQIRRIDFDIDIIINFRVNKRGAERRVATTAGVK
RALTHQAVNAGFCTQPAISVIAGDFDRHGFNTRHFTFRLFDDFSFETTRFSPAQIHTLKHARPVLCFRTARPRLNIEVAV
GAVIFAREHTAELKLRQFFFQGVEFSNGFVKGFFVVSFYSQFQQTRNIFQPLFHLVEGVDNGFEGGTLFTQRLCAFGFVP
DIRLFQLGVYFFQTLFLGVVV

Specific function: Unknown

COG id: COG1186

COG function: function code J; Protein chain release factor B

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38429; Mature: 38429

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
SPCFQTCFDKLIQAAVQHGLRVAGFYPGTQIFNAGVIKDIRTNLAAPADVGFIVFHRLFL
CCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH
GIFLLHLQFIKLRFHLLHGLVFVLVLGTVVLALGHDPGWDVSNTHRRFGTVNVLTARARC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCEE
AINVDAQIRRIDFDIDIIINFRVNKRGAERRVATTAGVKRALTHQAVNAGFCTQPAISVI
EEECCCEEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AGDFDRHGFNTRHFTFRLFDDFSFETTRFSPAQIHTLKHARPVLCFRTARPRLNIEVAVG
HCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEEEE
AVIFAREHTAELKLRQFFFQGVEFSNGFVKGFFVVSFYSQFQQTRNIFQPLFHLVEGVDN
EEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GFEGGTLFTQRLCAFGFVPDIRLFQLGVYFFQTLFLGVVV
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA