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The map label for this gene is ycdD [H]

Identifier: 218690154

GI number: 218690154

Start: 2390783

End: 2391310

Strand: Reverse

Name: ycdD [H]

Synonym: ECED1_2443

Alternate gene names: 218690154

Gene position: 2391310-2390783 (Counterclockwise)

Preceding gene: 218690155

Following gene: 218690153

Centisome position: 45.9

GC content: 44.13

Gene sequence:

>528_bases
ATGCAGCATTTAAAAAATATTACTGCGGGTAATCCAAAAACTGTTGCCCAATATCAACTGACAAAAAATTTTGATGTTAT
CTGGTTATGGTCCGAAGAGGGAAAAAACTGGTATGAGGAAGTAAGTAATTTTCAGGAAGACACGATAAAGATTGTTTACG
ATGAGAATAATATAATTGTCGGCATCACCAGAGATGCTTCAACGCTCAACCCTGAAGGTTTTAGCGTTGTCGAGGTTCCT
GATATTACCGCCAACCGACGTGCTGATGACTCAGGTAAATGGATGTTTAAGGATGGTGCCGTGATTAAGCGGATTTATAC
GGCAGACGAACAGCTGCAACTGGCGGAATTACAGAAGTCAGCTTTGCTTTCCGAAGCTGAAACTATCATTCAGCCACTGG
AACGCTCTGTCAGACTGAATATGGCAACAGATGAGGAGCGTAGCCGACTGGAAGCATGGGAACGCTACAGTGTTCTGGTC
AGCCGTGTGGATCCTGCAAATCCTGAATGGCCGGAAATGCCGCAATAA

Upstream 100 bases:

>100_bases
TGGTATTGTCGGTGAAGTCGATGGTGATGACCCCGCAGTATTCAGACCAATACAAAAATACATCAATGGCACATGGTATA
ACGTCGCACAGGTGTAATTT

Downstream 100 bases:

>100_bases
GTTGTATGATCTCTGGAGTGAGCTAACGTATCTATAGCACAGAGTAAAGCCTAATCTGACAGTCTGCTCTGTGCTAGGAG
CGGACTGACCTGCTTCCCGA

Product: putative phage tail fiber assembly protein (GpG)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEEGKNWYEEVSNFQEDTIKIVYDENNIIVGITRDASTLNPEGFSVVEVP
DITANRRADDSGKWMFKDGAVIKRIYTADEQLQLAELQKSALLSEAETIIQPLERSVRLNMATDEERSRLEAWERYSVLV
SRVDPANPEWPEMPQ

Sequences:

>Translated_175_residues
MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEEGKNWYEEVSNFQEDTIKIVYDENNIIVGITRDASTLNPEGFSVVEVP
DITANRRADDSGKWMFKDGAVIKRIYTADEQLQLAELQKSALLSEAETIIQPLERSVRLNMATDEERSRLEAWERYSVLV
SRVDPANPEWPEMPQ
>Mature_175_residues
MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEEGKNWYEEVSNFQEDTIKIVYDENNIIVGITRDASTLNPEGFSVVEVP
DITANRRADDSGKWMFKDGAVIKRIYTADEQLQLAELQKSALLSEAETIIQPLERSVRLNMATDEERSRLEAWERYSVLV
SRVDPANPEWPEMPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfa family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458 [H]

Pfam domain/function: PF02413 Caudo_TAP [H]

EC number: NA

Molecular weight: Translated: 20175; Mature: 20175

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEEGKNWYEEVSNFQEDTIKIVYDENNIIV
CCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCEEE
GITRDASTLNPEGFSVVEVPDITANRRADDSGKWMFKDGAVIKRIYTADEQLQLAELQKS
EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCEEEHHHCCCCHHHHHHHHHH
ALLSEAETIIQPLERSVRLNMATDEERSRLEAWERYSVLVSRVDPANPEWPEMPQ
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEEGKNWYEEVSNFQEDTIKIVYDENNIIV
CCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCEEE
GITRDASTLNPEGFSVVEVPDITANRRADDSGKWMFKDGAVIKRIYTADEQLQLAELQKS
EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCEEEHHHCCCCHHHHHHHHHH
ALLSEAETIIQPLERSVRLNMATDEERSRLEAWERYSVLVSRVDPANPEWPEMPQ
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1602967; 7920643 [H]