Click here to switch to the map view.

The map label for this gene is virB1 [H]

Identifier: 218689988

GI number: 218689988

Start: 2198922

End: 2199650

Strand: Direct

Name: virB1 [H]

Synonym: ECED1_2261

Alternate gene names: 218689988

Gene position: 2198922-2199650 (Clockwise)

Preceding gene: 218689987

Following gene: 218689989

Centisome position: 42.21

GC content: 56.79

Gene sequence:

>729_bases
TTGTTTACTGAGGTCACCATGCTTTCCACCACAGCCTTTCTGGCGATAGCCATGCAGTGCGCCGCCAGCATTCATCCGTC
CACGGCATTCGACGTGGCACGGGTGGAATCCGGTTTTAACCCTTATGCCATCGCTGAGATTGTCCCGAAGGCCGGCCCCT
CTTTCGGCGATCAACACATTATTTCTCACCTGCCAGCCAGCCGGGGAGATGCAGAGCATATTCTCCGTCGCCTGTCAGCA
CAGGATCGCCGTTACTCTGTCGGGCTGATGCAAATCACCAGCACCAATTTCCGCCATTATGGTGTGTCCGCCACAGAGCT
ACTTGATCCCTGTACCAATCTGTCCGTCTTCGAACACATTCTCAGAGACTGCTACCGGCGCGGCGGCACGCTGAAAAGGG
CGCTGAGTTGTTATTATTCCGGCAATTTCAGTACCGGGCAACAACCTGAAACGGCGTTTTCCGGAACGAGCTATATCCAG
CGAATCGGTTATCCGCCGGGATCATCCCGCTATGCGGTCCCCGGAACCCGTGAGGACAAATCATCAGTTGCCGTTCCCCT
GAAAACCGCCCCTGCCAGTGACTCATCCCGTCACCACGTGTTCTGGCCCGGAGTCGTCGTCCGTGGCGTCCCTGCGAAAC
TCCGCCAAGAAAAAATCTTCATCGCACCTTTCTCCGCGCCGTCAGTGCGCCGGAGTTTCTCCCTGTCACCCCGTGAGGAG
GAGGAATAA

Upstream 100 bases:

>100_bases
AAATAATCCACCACAGAATACGGGCCCCATCGAAACCGTGTCGTAACCACCCTTAATTCTGTTCCCACGGCATGCAGTAT
CAGCAGACCCTGCATGTCAC

Downstream 100 bases:

>100_bases
TGATACTTTTCCGCAAGCTAAAAGCTGTGGTCCCCCCCGTTTCGGCCTGTACGCTGACGACTTTTTCTGCAACCCCGGCA
CTGGCCGACGGATTTCAGCG

Product: putative type IV secretory pathway VirB1 component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MFTEVTMLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPASRGDAEHILRRLSA
QDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQ
RIGYPPGSSRYAVPGTREDKSSVAVPLKTAPASDSSRHHVFWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREE
EE

Sequences:

>Translated_242_residues
MFTEVTMLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPASRGDAEHILRRLSA
QDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQ
RIGYPPGSSRYAVPGTREDKSSVAVPLKTAPASDSSRHHVFWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREE
EE
>Mature_242_residues
MFTEVTMLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHIISHLPASRGDAEHILRRLSA
QDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHILRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQ
RIGYPPGSSRYAVPGTREDKSSVAVPLKTAPASDSSRHHVFWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREE
EE

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 26589; Mature: 26589

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTEVTMLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHI
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHCCCCCCCHHHH
ISHLPASRGDAEHILRRLSAQDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHI
HHHCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCCHHHHHCCCCCHHHHHHH
LRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPPGSSRYAVPGTREDK
HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCC
SSVAVPLKTAPASDSSRHHVFWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREE
CCEEEEEECCCCCCCCCCEEEECCCEEECCCHHHCCCEEEEEECCCCHHHHHCCCCCCCC
EE
CC
>Mature Secondary Structure
MFTEVTMLSTTAFLAIAMQCAASIHPSTAFDVARVESGFNPYAIAEIVPKAGPSFGDQHI
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHCCCCCCCHHHH
ISHLPASRGDAEHILRRLSAQDRRYSVGLMQITSTNFRHYGVSATELLDPCTNLSVFEHI
HHHCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCCHHHHHCCCCCHHHHHHH
LRDCYRRGGTLKRALSCYYSGNFSTGQQPETAFSGTSYIQRIGYPPGSSRYAVPGTREDK
HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCC
SSVAVPLKTAPASDSSRHHVFWPGVVVRGVPAKLRQEKIFIAPFSAPSVRRSFSLSPREE
CCEEEEEECCCCCCCCCCEEEECCCEEECCCHHHCCCEEEEEECCCCHHHHHCCCCCCCC
EE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]