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The map label for this gene is yedS [H]

Identifier: 218689959

GI number: 218689959

Start: 2153633

End: 2154775

Strand: Direct

Name: yedS [H]

Synonym: ECED1_2231

Alternate gene names: 218689959

Gene position: 2153633-2154775 (Clockwise)

Preceding gene: 218689954

Following gene: 218689960

Centisome position: 41.34

GC content: 42.26

Gene sequence:

>1143_bases
ATGTGCTTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTATAATCACAAGGGAATACATAATGAAAAGAAA
AGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAATTTACAATAAAGATGGCAATA
AAGTTGATTTCTACGGCAAGATGGTTGGCGAACGCATCTGGTCAAATACTGATGATAATAACAGCGAAAACGAAGATACC
TCCTATGCTCGTTTCGGTGTTAAAGGTGAAACCCAAATCACCAGCGAACTGACTGGTTTTGGTCAGTTTGAATACAACCT
CGACGCCAGCAAGCCCGAAGGCTCTAATCAGGAAAAAACCCGTTTAACCTTCGCAGGTTTGAAATATAACGAGTTAGGAT
CTTTCGACTATGGTCGTAACTACGGTGTTGCTTATGATGCCGCAGCTTATACCGATATGTTAGTTGAATGGGGTGGTGAT
TCCTGGGCTTCCGCTGACAACTTCATGAACGGTCGTACCAACGGTGTTGCAACCTACCGTAACTCTGATTTCTTTGGTCT
GGTTGATGGTCTGAATTTTGCTGTGCAATATCAAGGTAAGAACAGCAATCGTGGCGTTACTAAACAAAACGGTGATGGCT
ATGCGTTGTCTGTAGACTACAACATCGAAGGTTTTGGTTTTGTAGGTGCATATAGCAAATCTGATCGTACTAATGAACAA
GCTGGTGACGGCTACGGTGATAACGCTGAAGTGTGGTCATTAGCAGCCAAGTATGATGCAAATAATATCTATGCAGCAAT
GATGTACGGTGAAACCCGCAACATGACCGTTTTGGCTAATGATCATTTTGCAAATAAAACCCAAAACTTTGAAGCTGTTG
TACAGTATCAGTTCGACTTCGGTTTACGTCCGTCTTTAGGCTACGTATATTCCAAAGGCAAAGATCTTTATGCTCGTGAT
GGACATAAAGGTGTTGATGCTGACCGCGTAAATTATATCGAAGTTGGTACCTGGTACTACTTCAATAAGAACATGAACGT
CTACACAGCATACAAATTTAACCTGCTGGATAAAGACGATGCAGCGATTACCGATGCCGCAACTGATGACCAGTTTGCAG
TTGGTATCGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TGAATTATATTAAATAGATTAGAAACATTTTGAAATCTTTTAAATACATTTGTTACATGTAACCCTTAAAATAAAATGAA
CTTCATAGAATAGTATCCAA

Downstream 100 bases:

>100_bases
TCAGCCAACGCGCCGCGGCGTGTTACTGTAAAACTTAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTA
TTGGCATTTTATCTCCCTCT

Product: outer membrane protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDT
SYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKTRLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGD
SWASADNFMNGRTNGVATYRNSDFFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYALSVDYNIEGFGFVGAYSKSDRTNEQ
AGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYARD
GHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGIVYQF

Sequences:

>Translated_380_residues
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDT
SYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKTRLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGD
SWASADNFMNGRTNGVATYRNSDFFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYALSVDYNIEGFGFVGAYSKSDRTNEQ
AGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYARD
GHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGIVYQF
>Mature_380_residues
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIWSNTDDNNSENEDT
SYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKTRLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGD
SWASADNFMNGRTNGVATYRNSDFFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYALSVDYNIEGFGFVGAYSKSDRTNEQ
AGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYARD
GHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGIVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787160, Length=371, Percent_Identity=58.4905660377358, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1786436, Length=363, Percent_Identity=56.4738292011019, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1788544, Length=376, Percent_Identity=55.5851063829787, Blast_Score=367, Evalue=1e-103,
Organism=Escherichia coli, GI1787641, Length=380, Percent_Identity=57.3684210526316, Blast_Score=359, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42591; Mature: 42591

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEHHHH
MVGERIWSNTDDNNSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKT
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCE
RLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYR
EEEEECCEECCCCCCCCCCCCCEEECHHHHHHHHEECCCCCCCCHHHCCCCCCCCEEEEE
NSDFFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYALSVDYNIEGFGFVGAYSKSDRTNEQ
CCCCEEEECCCEEEEEECCCCCCCCCCEECCCEEEEEEEECCCCEEEEEECCCCCCCCCC
AGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDF
CCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECC
GLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDD
CCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC
AAITDAATDDQFAVGIVYQF
CEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure
MCFFWITALIDIFMKIIITREYIMKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEHHHH
MVGERIWSNTDDNNSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKT
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCE
RLTFAGLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYR
EEEEECCEECCCCCCCCCCCCCEEECHHHHHHHHEECCCCCCCCHHHCCCCCCCCEEEEE
NSDFFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYALSVDYNIEGFGFVGAYSKSDRTNEQ
CCCCEEEECCCEEEEEECCCCCCCCCCEECCCEEEEEEEECCCCEEEEEECCCCCCCCCC
AGDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDF
CCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECC
GLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDD
CCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC
AAITDAATDDQFAVGIVYQF
CEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]