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The map label for this gene is ybcM [H]

Identifier: 218689929

GI number: 218689929

Start: 2130161

End: 2130862

Strand: Reverse

Name: ybcM [H]

Synonym: ECED1_2201

Alternate gene names: 218689929

Gene position: 2130862-2130161 (Counterclockwise)

Preceding gene: 218689930

Following gene: 218689928

Centisome position: 40.9

GC content: 37.61

Gene sequence:

>702_bases
ATGTCGTATCCGTCAGGGAAAAAAATTATCAATTGGGAGACGCATAGTCTAACTGTTGATAATAATCAGATAATATTATT
TCCCTGTGGATATGAATTTTATATTGCGAATTACCCAGAAGCAGGTCTTTATCTTGCAGAAATGCTTTATTATCCCATTG
ATCTAATTGAAAAGTTCCAAAATCTTTATGCGATAACCGATCAAATTCGTAACACGACAGGTTTCTGCTTACCTCAGAAT
CCCGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTATTTCCCGAGGCTTCTCAACGCAAATTCAGGAACACTTAGC
AATGGGCGTTCTACTTTCATTAGGAGCACATCATGTTAATTGTTTACTTTTATCAGATAGTAAACAATCATTAATAAGTC
GTTGTTATAACCTAATGCTATCCGAACCTGGAACAAAATGGACAGCAAACAAGGTAGCGAGATATCTCTACATTTCTGTT
TCCACATTGCATCGCCGTCTGGCAAGCGAGGGAGTAAGTTTTCAAAGTATATTGGACGACGTGAGGTTAAATAATGCGTT
GTCTGCTATACAAACGACAGTAAAACCCATCAGCGAGATTGCCAGGGAAAATGGTTACAAGTGTCCTTCTCGTTTTACTG
AAAGGTTCCATAATCGTTTTAAGATAACACCAAGAGAGCTAAGAAAAGCGTCCAGAGAGTAA

Upstream 100 bases:

>100_bases
AGAGTATGCTGGCAAAAGATAGGACTAACCTAAAGATTGAAGAAATACGGATGCATAAACATCATGAGATTCACAGGGTT
AAGCCTCTTATGCCAGCTTT

Downstream 100 bases:

>100_bases
AAGTATTTTATGAAGGAGCAACAGCATAGATTTTTATTTTGGAAAATAAATACGGCATACTCAACCTATTGGAGCCTGAA
CAATCCGGTGACTTCTGCGC

Product: putative DNA-binding transcriptional regulator; DLP12 prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSYPSGKKIINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQNLYAITDQIRNTTGFCLPQN
PELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWTANKVARYLYISV
STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFKITPRELRKASRE

Sequences:

>Translated_233_residues
MSYPSGKKIINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQNLYAITDQIRNTTGFCLPQN
PELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWTANKVARYLYISV
STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFKITPRELRKASRE
>Mature_232_residues
SYPSGKKIINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQNLYAITDQIRNTTGFCLPQNP
ELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSKQSLISRCYNLMLSEPGTKWTANKVARYLYISVS
TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFKITPRELRKASRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=228, Percent_Identity=91.2280701754386, Blast_Score=436, Evalue=1e-124,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26800; Mature: 26669

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYPSGKKIINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQ
CCCCCCCEEEEEECCEEEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
NLYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVN
HHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEE
CLLLSDSKQSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDD
EEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFKITPRELRKASRE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SYPSGKKIINWETHSLTVDNNQIILFPCGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQ
CCCCCCEEEEEECCEEEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
NLYAITDQIRNTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVN
HHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEE
CLLLSDSKQSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDD
EEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFKITPRELRKASRE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]