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The map label for this gene is flhC [H]

Identifier: 218689887

GI number: 218689887

Start: 2094514

End: 2095092

Strand: Reverse

Name: flhC [H]

Synonym: ECED1_2159

Alternate gene names: 218689887

Gene position: 2095092-2094514 (Counterclockwise)

Preceding gene: 218689888

Following gene: 218689886

Centisome position: 40.22

GC content: 49.22

Gene sequence:

>579_bases
ATGAGTGAAAAAAGCATTGTTCAGGAAGCGCGGGATATTCAGCTGGCAATGGAATTGATCACCCTGGGCGCTCGTTTGCA
GATGCTGGAAAGCGAAACACAGTTAAGTCGCGGACGTCTGATAAAACTCTATAAAGAACTGCGCGGAAGCCCACCGCCGA
AAGGCATGCTGCCATTCTCAACCGACTGGTTTATGACCTGGGAACAAAACGTTCATGCTTCGATGTTCTGTAATTCATGG
CAGTTTTTACTGAAAACTGGCTTGTGTAATGGCGTCGATGCGGTGATCAAAGCCTACCGTTTATACCTTGAACAGTGCCC
GCAAGCAGAAGAAGGACCGCTGCTGGCATTAACCCGTGCCTGGACATTGGTGCGGTTTGTTGAAAGTGGATTACTGCAAC
TTTCCAGCTGCAACTGCTGCGGCGGCAATTTTATTACCCATGCTCACCAGCCTGTTGGCAGCTTTGCCTGCAGCTTATGT
CAGCCGCCATCCCGGGCAGTAAAAAGACGTAAACTTTCCCAGAATCCTGCCGATATTATCCCACAACTGCTGGATGAACA
GAGAGTACAGGCTGTTTAA

Upstream 100 bases:

>100_bases
ACGATCTCCAGCAAATTCATACCGGCATCATGCTCTCAACACGCTTGCTGAATGATGTTAATCAGCCTGAAGAAGCGCTG
CGCAAGAAAAGGGCCTGATC

Downstream 100 bases:

>100_bases
CTGATACGGTGTGGCGAAACATTCCAGCAGCGGTAACGATGTACCGCTGCTTTTTTTTGCCCCTATCGCGTGTTAACGCC
TGACGACTGAACATCCTGTC

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNSW
QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC
QPPSRAVKRRKLSQNPADIIPQLLDEQRVQAV

Sequences:

>Translated_192_residues
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNSW
QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC
QPPSRAVKRRKLSQNPADIIPQLLDEQRVQAV
>Mature_191_residues
SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNSWQ
FLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ
PPSRAVKRRKLSQNPADIIPQLLDEQRVQAV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=192, Percent_Identity=99.4791666666667, Blast_Score=397, Evalue=1e-112,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21582; Mature: 21451

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNVHASMFCNSWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA
CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII
HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
PQLLDEQRVQAV
HHHHHHHHHHCC
>Mature Secondary Structure 
SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNVHASMFCNSWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA
CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII
HHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
PQLLDEQRVQAV
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]