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The map label for this gene is yeaM [H]

Identifier: 218689730

GI number: 218689730

Start: 1949516

End: 1950337

Strand: Reverse

Name: yeaM [H]

Synonym: ECED1_1996

Alternate gene names: 218689730

Gene position: 1950337-1949516 (Counterclockwise)

Preceding gene: 218689733

Following gene: 218689728

Centisome position: 37.44

GC content: 50.24

Gene sequence:

>822_bases
ATGATGCACAGGTTGAATCTCAATGGCTATGAACCCGACCGACACCATGAAGCCGCGGTCGCATTTTGTATTCACGCCGG
AACGGATGAGTTAACCAGTCCTGTACATCAGCACCGCAAAGGGCAGTTGATACTGGCACTACATGGTGCAATTACCTGTA
CGGTGGAAAATGCTTTGTGGATGGTGCCGCCACAATATGCGGTTTGGATACCGGGCGGGGTGAAACATAGCAATCAAGTG
ACAGCTAACGCTGAACTCTGTTTTCTGTTTATCGAGCCCAGCGCAGTGACAATGCCGACAACATGTTGCACATTGAAAAT
ATCGCCCTTATGCCGGGAATTAATTTTAACCCTGGCAAACAGGACGACGACTCAGCGTGCTGAGCCGATGACCCGCAGAT
TAATTCAGGTCCTGTTTGATGAACTCCCTCAGCAGCCACAACAACAGCTGCACCTGCCCGTTTCTTCTCATCTTAAAATC
CGCACGATGGTGGAGATGATGGCGAAAGAGCCCGTCGAGTGGGGCTCATTGGGGCAATGGGCTGGCTTTTTTGCGATGAG
TGAACGCAATCTTGCCCGGCTGATAGTGAAAGAGACGGGGTTGAGTTTTCGCCAGTGGCGTCAGCAGTTACAGCTGATTA
TGGCGCTTCAGGGATTAGTGAAAGGCGATACTGTACAGAAAGTTGCTCATACGCTGGGGTATGATTCAACAACGGCCTTT
ATTACTATGTTTAAGAAAGGCCTGGGGCAAACGCCAGGCCGATATATTGCGGGATTAACTACTGTTTCCCCACAATCAGC
GAAACCAGACCCGCGGCAATAA

Upstream 100 bases:

>100_bases
TCATATGCTTCTCATTGTTACAAACGAGGCTGTACCTTACCGTTTTTATTGTTATGTTGAATCAAGCTAAAATGACAAAA
TATCGCTAAATTCGGACAAA

Downstream 100 bases:

>100_bases
GCGGGCCAACCGGTACGCCGCGAAACAGCGCCACGCCTAAAACAGTGCCCACCAGCAGCCCGGCGACCAGTTGCGGCTGG
CTGCCCATTAACGTCACGCC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVKHSNQV
TANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHLKI
RTMVEMMAKEPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ

Sequences:

>Translated_273_residues
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVKHSNQV
TANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHLKI
RTMVEMMAKEPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ
>Mature_273_residues
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQYAVWIPGGVKHSNQV
TANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHLKI
RTMVEMMAKEPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=273, Percent_Identity=98.1684981684982, Blast_Score=556, Evalue=1e-160,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30558; Mature: 30558

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALW
CCEECCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHHHCCCCEEEEECCEEEEEECCEEE
MVPPQYAVWIPGGVKHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLAN
ECCCCEEEECCCCCCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHC
RTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHLKIRTMVEMMAKEPVEWGSLGQW
CCCHHHCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHCHHHHHHHHHHHHCCCCCCCCCHH
AGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ
HHHHHHHCCCCCCHHEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALW
CCEECCCCCCCCCCHHHHEEEEEEECCCHHHHHHHHHHCCCCEEEEECCEEEEEECCEEE
MVPPQYAVWIPGGVKHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLAN
ECCCCEEEECCCCCCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHHC
RTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHLKIRTMVEMMAKEPVEWGSLGQW
CCCHHHCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHCHHHHHHHHHHHHCCCCCCCCCHH
AGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAF
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH
ITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ
HHHHHHHCCCCCCHHEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]