Click here to switch to the map view.

The map label for this gene is ydhX [H]

Identifier: 218689614

GI number: 218689614

Start: 1827837

End: 1828505

Strand: Reverse

Name: ydhX [H]

Synonym: ECED1_1869

Alternate gene names: 218689614

Gene position: 1828505-1827837 (Counterclockwise)

Preceding gene: 218689615

Following gene: 218689613

Centisome position: 35.1

GC content: 49.63

Gene sequence:

>669_bases
ATGTCCTTCACTCGACGCAAATTTGTTCTGGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGC
GAACACGAGGCAAGAAAAGGAAGTTCGGTATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCC
GCGCATGCCGTAAAACTAACCACGTCCCCGCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGAC
AACGAAACGCAGTATCACTTTTTTCGCCAGTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTTTGTCCGACAGC
GGCATCGTGGCGTGATGAGCAGGGGATCGTACGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTT
GTCCTTACCAGGTTCGCTACCTTAACCCTGTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCA
AAAGGCTTTCCGCCCATTTGCGTCAGCGCCTGTCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCA
GGCGTGGTTGCAGGAAAATAAATACTATCAATATCAGCTACCTGGTGCCGGGAAACCGCACCTGTATCGCCGGTTCGGTC
AACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
CGAATGGTTCGAGGTAGAGCAGTTTCAGAACCCCTGAAATTTCAGGGAGATGTCATGGATAGGGTGGACAGTAGCAGCCA
CTGCATTAGGGGATAATCAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTGGCGAACTATGTGCCACTGTTCACTCCCCAATTTTGGCCGGTG
TGGTTGATCATTGCCGGACT

Product: putative 4Fe-4S ferridoxin-type subunit of oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDND
NETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
KGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_222_residues
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDND
NETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
KGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_221_residues
SFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDN
ETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAK
GFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=99.0990990990991, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.2957746478873, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.0645161290323, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.1578947368421, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=31.1004784688995, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.3191489361702, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1790326, Length=181, Percent_Identity=29.2817679558011, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=34.8101265822785, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.8055555555556, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=27.8145695364238, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787740, Length=90, Percent_Identity=34.4444444444444, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787478, Length=90, Percent_Identity=34.4444444444444, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=33.1081081081081, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25108; Mature: 24977

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
7.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTN
CCCCHHHHHEECCEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCC
HVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVE
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCEEEC
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
CCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECC
EDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTN
CCCHHHHHEECCEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCC
HVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVE
CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCEEEC
KSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGR
CCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEECC
EDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]