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The map label for this gene is ynfC [H]

Identifier: 218689506

GI number: 218689506

Start: 1722633

End: 1723343

Strand: Reverse

Name: ynfC [H]

Synonym: ECED1_1753

Alternate gene names: 218689506

Gene position: 1723343-1722633 (Counterclockwise)

Preceding gene: 218689513

Following gene: 218689503

Centisome position: 33.08

GC content: 44.16

Gene sequence:

>711_bases
GTGAAATACAAATTACTGCCATGCTTACTCGCGATATTACTCACAGGATGTGACCGCACAGAGGTAACACTTTCATTTAC
CCCGGAGATGGCCAGTTTCTCTAATGAATTCGATTTTGATCCGCTGCGTGGTCCCGTAAAAGATTTCACTCAGACATTAA
TGGATGAGCAAGGTGAAGTGACGAAACGTGTTTCGGGGACTTTGTCGGAAGAAGGCTGTTTTGATTCTCTCGAATTACTG
GATCTGGAAAATAATACCGTGGTTGCCCTGGTACTGGACGCCAATTATTACCGTGATGCCGAGACGCTGGAGAAAAGAGT
TCGTTTGCAGGGAAAATGCCAGCTAGCAGAATTACCTTCTGCCGGGGTGAGTTGGGAAACCGATGATAATGGTTTCGTGA
TTAAAGCCAGCAGCAAACAGATGCAGATGGAATATCGCTATGATGATCAGGGGTATCCGCTGGGTAAAACCACGAAAAGT
AACGATAAAACATTATCTGTCAGCGCCACGCCATCAACGGACCCGATCAAAAAATTAGATTACACAGCGGTTACTTTACT
GAATAATCAACGGGTTGGAAATGTAAAACAGAGCTGTGAATATGACAATCACGCCAATCCGGTGGACTGTCAGCTAATCA
TTGTTGATGAAGGAGTAAAACCCGCCGTCGAACGGGTTTACACCATCAAAAATACGATCGATTATTATTAA

Upstream 100 bases:

>100_bases
TCCTTACGCGAAGATAACTTCTTTAAGCATAGCATTTAACGTGTAAAGTACTGTATTTGCTACTATGATTGAGAATCATC
TCTACTCTCAGGTGACTGTT

Downstream 100 bases:

>100_bases
TACTATTGTGCGGTCGGCTTCAGGAGAGTCTGACCCGGTGTTTTGTGCTCAGCCAGATACTGATGCTGGAATATACACAT
GCGAATGGCATTACGATATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKYKLLPCLLAILLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELL
DLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDNHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY

Sequences:

>Translated_236_residues
MKYKLLPCLLAILLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELL
DLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDNHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY
>Mature_236_residues
MKYKLLPCLLAILLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELL
DLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDNHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family [H]

Homologues:

Organism=Escherichia coli, GI87081939, Length=236, Percent_Identity=99.1525423728814, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010646
- ProDom:   PD120112 [H]

Pfam domain/function: PF06788 UPF0257 [H]

EC number: NA

Molecular weight: Translated: 26500; Mature: 26500

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKLLPCLLAILLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEV
CCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCH
TKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPS
HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC
AGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVSATPSTDPIKKLD
CCCCEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCC
YTAVTLLNNQRVGNVKQSCEYDNHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY
CEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYKLLPCLLAILLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEV
CCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCH
TKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPS
HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC
AGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVSATPSTDPIKKLD
CCCCEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCC
YTAVTLLNNQRVGNVKQSCEYDNHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY
CEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA