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The map label for this gene is lomR [H]

Identifier: 218689246

GI number: 218689246

Start: 1433250

End: 1433849

Strand: Direct

Name: lomR [H]

Synonym: ECED1_1463

Alternate gene names: 218689246

Gene position: 1433250-1433849 (Clockwise)

Preceding gene: 218689245

Following gene: 218689247

Centisome position: 27.51

GC content: 55.0

Gene sequence:

>600_bases
ATGCGTAAAGTTTGTGCAGCCATTTTGTCCGCAGCCATCTGTCTGTCCGTATCCGGTGCGCCTGCATGGGCGTCTGAGCA
GCAGGCCACGCTGAGTGCGGGGTATCTTCATGCCCTGACGAACACTACCGGTAGTGATGATCTGAACGGGATTAACGTGA
AATACCGTTATGAATTTACGGACACGCTGGGGCTGATTACGTCATTCAGTTATGCCAATGCTGAAGGTGAGCAAAAAACG
CACTACAACGATACCCGCTGGCATGAGGATTCTGTGCGTAACCGCTGGTTCAGCGTGATGGCGGGGCCATCTGTGCGCGT
GAATGAATGGTTCAGCGCTTATGCGCTGGCCGGAGTGTCGTATGCCCGGGTGTCGTCTTTTGCCGGTGATTATGTGACCC
TCACGTCAGATGAGGGTAAAAAGCAGGAGCACCTGACCCGTTCGGACAGCGGACGCCGCAGCCATACCGCACTGACATAC
AGTGCAGGCGTGCAGATTAACCCGACAGAAAATATCGTGGTCGACCTGGCTTATGAAGCCTCAGGACGTGGTGACTGGCG
TACGGAGGCGTTTATTGTCGGCACCGGATACCGGTTCTGA

Upstream 100 bases:

>100_bases
AAGAAAGCCACTGCAGGCATCACGATTAGCTGAATTTTATAACCCAGATACGGGCGCCAGAAATGGCGCCTTTTTTATTG
CAGAAAAGCGAGAGGTAATT

Downstream 100 bases:

>100_bases
GAGTATATGACGATTTATCTTCTGCAAACATTGTTATAATTCGCAGGTTCATCCGCCTCATGTGATGAACTGCGTTTGAG
GAAACGTAAAGTTACACTGT

Product: putative Lom-like outer membrane protein of phage origin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKVCAAILSAAICLSVSGAPAWASEQQATLSAGYLHALTNTTGSDDLNGINVKYRYEFTDTLGLITSFSYANAEGEQKT
HYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVSYARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTY
SAGVQINPTENIVVDLAYEASGRGDWRTEAFIVGTGYRF

Sequences:

>Translated_199_residues
MRKVCAAILSAAICLSVSGAPAWASEQQATLSAGYLHALTNTTGSDDLNGINVKYRYEFTDTLGLITSFSYANAEGEQKT
HYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVSYARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTY
SAGVQINPTENIVVDLAYEASGRGDWRTEAFIVGTGYRF
>Mature_199_residues
MRKVCAAILSAAICLSVSGAPAWASEQQATLSAGYLHALTNTTGSDDLNGINVKYRYEFTDTLGLITSFSYANAEGEQKT
HYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVSYARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTY
SAGVQINPTENIVVDLAYEASGRGDWRTEAFIVGTGYRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=202, Percent_Identity=31.6831683168317, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 21876; Mature: 21876

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00694 ENT_VIR_OMP_1 ; PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVCAAILSAAICLSVSGAPAWASEQQATLSAGYLHALTNTTGSDDLNGINVKYRYEFT
CHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCEEEEEEEEC
DTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVS
HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHCCH
YARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVDLAYEA
HHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCEEEEEECCEEECCCCCEEEEEEEEC
SGRGDWRTEAFIVGTGYRF
CCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MRKVCAAILSAAICLSVSGAPAWASEQQATLSAGYLHALTNTTGSDDLNGINVKYRYEFT
CHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCEEEEEEEEC
DTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVS
HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHCCH
YARVSSFAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVDLAYEA
HHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCEEEEEECCEEECCCCCEEEEEEEEC
SGRGDWRTEAFIVGTGYRF
CCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]