Click here to switch to the map view.

The map label for this gene is cydB

Identifier: 218688525

GI number: 218688525

Start: 732583

End: 733722

Strand: Direct

Name: cydB

Synonym: ECED1_0701

Alternate gene names: 218688525

Gene position: 732583-733722 (Clockwise)

Preceding gene: 218688524

Following gene: 218688526

Centisome position: 14.06

GC content: 53.86

Gene sequence:

>1140_bases
ATGATCGATTATGAAGTATTGCGTTTTATCTGGTGGCTGCTGGTTGGCGTTCTGCTAATTGGTTTTGCAGTCACTGACGG
TTTCGACATGGGGGTGGGCATGCTCACCCGTTTCCTCGGTCGTAACGACACCGAGCGTCGAATTATGATTAACTCCATCG
CACCACACTGGGACGGTAACCAGGTTTGGCTGATCACCGCAGGCGGCGCACTGTTTGCTGCCTGGCCGATGGTCTATGCC
GCTGCGTTCTCCGGCTTCTATGTGGCGATGATCCTCGTACTGGCGTCTTTGTTCTTCCGTCCGGTCGGTTTTGACTACCG
CTCTAAGATTGAAGAAACCCGCTGGCGTAACATGTGGGACTGGGGCATCTTCATTGGTAGCTTCGTTCCGCCGCTGGTGA
TTGGTGTAGCGTTCGGTAACCTGTTGCAGGGCGTACCATTCAACGTTGATGAATATCTGCGTCTGTACTACACCGGTAAC
TTCTTCCAGCTGCTTAACCCGTTCGGCCTGCTGGCAGGTGTGGTGAGCGTAGGGATGATCATTACTCAGGGCGCAACCTA
TCTGCAAATGCGTACCGTGGGCGAACTACACCTGCGTACCCGTGCAACGGCTCAGGTGGCGGCACTGGTGACGCTGGTCT
GCTTCGCACTGGCTGGCGTATGGGTGATGTACGGTATCGATGGTTATGTCGTGAAATCGACAATGGACCATTACGCAGCC
TCCAACCCGCTGAATAAAGAAGTGGTTCGTGAAGCTGGCGCATGGCTGGTTAACTTCAACAACACGCCAATTCTGTGGGC
TATTCCGGCACTGGGTGTGGTTCTGCCGCTGCTGACCATCCTGACTGCACGTATGGATAAAGCCGCGTGGGCGTTTGTGT
TCTCCTCCCTGACGCTGGCCTGCATCATCCTGACTGCCGGTATCGCAATGTTCCCGTTTGTGATGCCGTCCAGCACCATG
ATGAACGCAAGTCTGACAATGTGGGATGCAACTTCCAGCCAGCTGACGCTTAACGTCATGACCTGGGTTGCGGTGGTTCT
GGTACCGATCATTCTGCTCTACACCGCCTGGTGTTACTGGAAAATGTTCGGTCGTATCACCAAAGAAGATATTGAACGTA
ACACCCACTCTCTGTACTAA

Upstream 100 bases:

>100_bases
GTTTGCACGCCTCGGCCCAAGCAGCCTGAAAACCGGTCGCTATCACTTTGAGCAGTCTTCCACGACTACTCAGCCGGCAC
GCTAAGACAGGAGTCGTCAA

Downstream 100 bases:

>100_bases
GTAAGGAGCTAAAAATGTGGTATTTCGCATGGATTCTGGGAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTG
GCGCTTGAGCACGTCGAATC

Product: cytochrome d terminal oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA
AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA
SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM
MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

Sequences:

>Translated_379_residues
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA
AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA
SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM
MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
>Mature_379_residues
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA
AAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA
SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTM
MNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=100, Blast_Score=765, Evalue=0.0,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=57.5197889182058, Blast_Score=450, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYDB_ECO57 (P0ABK4)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A99725
- PIR:   B85576
- RefSeq:   NP_286462.1
- RefSeq:   NP_308796.1
- ProteinModelPortal:   P0ABK4
- EnsemblBacteria:   EBESCT00000025349
- EnsemblBacteria:   EBESCT00000059991
- GeneID:   917500
- GeneID:   957864
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0901
- KEGG:   ecs:ECs0769
- GeneTree:   EBGT00050000009321
- HOGENOM:   HBG413915
- OMA:   IGFAIMD
- ProtClustDB:   PRK15003
- BioCyc:   ECOL83334:ECS0769-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003317
- TIGRFAMs:   TIGR00203

Pfam domain/function: PF02322 Cyto_ox_2

EC number: 1.10.3.-

Molecular weight: Translated: 42454; Mature: 42454

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1d359c6c)-; HASH(0x1e9f0138)-; HASH(0x1e61a984)-; HASH(0x1f3c2dec)-; HASH(0x1f3069f8)-; HASH(0x1e7192bc)-; HASH(0x1da48450)-; HASH(0x1f3083d8)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796