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The map label for this gene is cyoD [H]

Identifier: 218688292

GI number: 218688292

Start: 468439

End: 468768

Strand: Reverse

Name: cyoD [H]

Synonym: ECED1_0452

Alternate gene names: 218688292

Gene position: 468768-468439 (Counterclockwise)

Preceding gene: 218688293

Following gene: 218688291

Centisome position: 9.0

GC content: 49.09

Gene sequence:

>330_bases
ATGAGTCATTCTAACGCAAGCAGCGGCGCATCCCATGGCAGCGTAAAGACCTACATGACAGGCTTTATCCTGTCGATAAT
CCTGACGGTAATTCCGTTCTGGATGGTGATGACAGGGGCTGCCTCTCCGGCCGTAATTCTGGGAACAATCCTGGCAATGG
CAGTGGTACAGATTCTGGTGCATCTGGTGTGCTTCCTGCACATGAATACCAAATCAGATGAAGGCTGGAATATGACGGCA
TTTGTCTTCACCGTGCTAATCATCGCCATCCTGGTTGTGGGCTCCATTTGGATTATGTGGAACCTCAACTACAACATGAT
GATGCACTAA

Upstream 100 bases:

>100_bases
CTAACCGTACCCGCATCATGTGCCTGAGCCTGTTCTGGCACTTCCTGGATGTGGTTTGGATCTGTGTGTTCACTGTTGTT
TATCTGATGGGGGCGATGTA

Downstream 100 bases:

>100_bases
GAGCGGCGGTTATGATATTTAAGCAATACCTGCAAGTAACGAAACCAGGCATCATCTTTGGCAACCTGATCTCGGTGATT
GGGGGATTCCTGTTGGCCTC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSHSNASSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTA
FVFTVLIIAILVVGSIWIMWNLNYNMMMH

Sequences:

>Translated_109_residues
MSHSNASSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTA
FVFTVLIIAILVVGSIWIMWNLNYNMMMH
>Mature_108_residues
SHSNASSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAF
VFTVLIIAILVVGSIWIMWNLNYNMMMH

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=109, Percent_Identity=96.3302752293578, Blast_Score=207, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 11963; Mature: 11831

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
10.1 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
9.3 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSNASSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEECC
>Mature Secondary Structure 
SHSNASSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]