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The map label for this gene is araJ [H]

Identifier: 218688258

GI number: 218688258

Start: 432286

End: 433470

Strand: Reverse

Name: araJ [H]

Synonym: ECED1_0418

Alternate gene names: 218688258

Gene position: 433470-432286 (Counterclockwise)

Preceding gene: 218688259

Following gene: 218688256

Centisome position: 8.32

GC content: 49.87

Gene sequence:

>1185_bases
ATGAAAAAAGTTATTTTATCTTTGGCTCTGGGCACGTTTGGTTTGGGGATGGCCGAATTTGGCATTATGGGCGTGCTCAC
GGAGCTGGCGCATAACGTAGGAATTTCGATTCCTGCCGCCGGGCATATGATCTCGTATTATGCGCTGGGGGTGGTGGTCG
GTGCGCCTATAATCGCGCTTTTTTCCAGCCGCTACTCACTCAAACATATCTTGTTGTTTCTGGTGGCGTTGTGCGTCATT
GGCAACGCCATGTTCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTTTCCGGCTTTCCGCATGGTGC
ATTTTTTGGCGTCGGCGCGATCGTGTTATCAAAAATTATCAAACCCGGCAAAGTCACCGCCGCCGTGGCAGGGATGGTTT
CCGGGATGACAGTCGCCAATTTGCTGGGCATTCCACTGGGAACGTATTTAAGTCAGGAATTTAGTTGGCGTTACACCTTT
TTGTTGATCGCTGTTTTTAATATTGCGGTGATGGCATCGGTCTATTTTTGGGTGCCGGATATTCGCGACGAGGCGAAAGG
AAAACTACGCGAACAATTTCATTTTTTACGCAGCCCTGCCCCGTGGTTAATTTTCGCCGCTACGATGTTTGGCAACGCAG
GTGTGTTTGCCTGGTTCAGCTACGTAAAGCCATACATGATGTTTATTTCCGGTTTTTCGGAAACGGCGATGACCTTTATT
ATGATGTTAGTTGGGCTAGGGATGGTGCTGGGGAATATGCTAAGTGGCAGGATTTCAGGACGTTATTCACCACTGCGCAT
TGCAGCAGTGACTGACTTTATCATTGTACTGGCACTGCTGATGCTCTTTTTCTTCGGCGGTATGAAAACAACGTCGCTTA
TTTTTGCTTTTATTTGTTGCGCGGGATTATTTGCCCTATCAGCACCTCTACAAATATTATTACTGCAAAATGCCAAAGGC
GGAGAGTTATTAGGTGCCGCAGGTGGGCAAATAGCGTTTAACCTCGGTAGCGCCGTCGGCGCATATTGCGGTGGTATGAT
GCTGACGCTGGGGCTGGCATATAATTACGTGGCGCTGCCCGCTGCCCTGCTTTCGTTTGCTGCGATGTCGTCGTTGCTGC
TGTATGGTCGCTATAAGCGCCAGCAAGCGGCGGATAGTTCGGTGCTAGCGAAACCACTGGGGTAG

Upstream 100 bases:

>100_bases
AGGGGCGAATTATCTCTTGGCCTCGCTGGTCGTTATCCTGCAATCTATCACTTTATTGGCTACGGTGATTGGTAGCCGTT
CTGGTGGTTGTGATGGTGGT

Downstream 100 bases:

>100_bases
ATAGCAGTCGCAGTGCGCATCGCTTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGACTGTTCATTTTGTA
GGCCTGATAAGACACGCCAG

Product: MFS transport protein AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFI
MMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSSVLAKPLG

Sequences:

>Translated_394_residues
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFI
MMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSSVLAKPLG
>Mature_394_residues
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFI
MMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSSVLAKPLG

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=394, Percent_Identity=98.9847715736041, Blast_Score=766, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=379, Percent_Identity=32.1899736147757, Blast_Score=178, Evalue=7e-46,
Organism=Escherichia coli, GI145693198, Length=348, Percent_Identity=25, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787808, Length=259, Percent_Identity=25.4826254826255, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41961; Mature: 41961

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]