Click here to switch to the map view.

The map label for this gene is ligT [H]

Identifier: 218688024

GI number: 218688024

Start: 167502

End: 168032

Strand: Reverse

Name: ligT [H]

Synonym: ECED1_0152

Alternate gene names: 218688024

Gene position: 168032-167502 (Counterclockwise)

Preceding gene: 218688031

Following gene: 218688023

Centisome position: 3.23

GC content: 56.31

Gene sequence:

>531_bases
ATGTCTGAACCGCAACGGCTGTTCTTTGCTATCGACTTACCTGCAGAAATCCGCGAACAGATTATCCGCTGGCGCGCCAC
ACACTTCCCACCTGAGGCGGGACGTCCGGTCGCCGCCGATAATTTGCATCTGACTCTGGCATTTTTAGGCGAAGTGAGCG
CAGAGAAAGAGAAGGCGCTTTCTCTTTTAGCCGGACGGATTCGTCAACCTGGTTTCACACTCACGCTTGATGACGCCGGT
CAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGACAGCCGCCTCGCGGCTTAATCCAGCTGGCGAATATGCTCCG
CTCACAGGCTGCCCGCAGCGGTTGTTTTCAAAGCAATCGTCCGTTTCATCCACATATTACCTTATTGCGCGACGCCAGCG
AGGCGGTGACAATCCCGCCGCCAGGTTTTAACTGGTCGTATACGGTGACGGAGTTCACCCTTTACGCCTCCTCGTTTGCC
CGTGGACGCACACGCTACACGCCGCTAAAACGCTGGGCGCTAACGCAATAA

Upstream 100 bases:

>100_bases
GACGGCAGCAACGGGCAACGACGACACAAAACGCTCCAGAGGGTTAACATTCTTCGCGCCACATTGTAGCATCGCGGTAA
TTCATAACCGAGTGCCTCAC

Downstream 100 bases:

>100_bases
CAAGGATTGTCGCAATGGAATTTTCTCCCCCTCTACAGCGCGCGACGCTAATTCAGCGTTACAAACGTTTTTTAGCCGAT
GTGATCACACCCGATGGTCG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSEPQRLFFAIDLPAEIREQIIRWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAG
QWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYTVTEFTLYASSFA
RGRTRYTPLKRWALTQ

Sequences:

>Translated_176_residues
MSEPQRLFFAIDLPAEIREQIIRWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAG
QWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYTVTEFTLYASSFA
RGRTRYTPLKRWALTQ
>Mature_175_residues
SEPQRLFFAIDLPAEIREQIIRWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQ
WLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYTVTEFTLYASSFAR
GRTRYTPLKRWALTQ

Specific function: Specifically ligates tRNA half-molecules containing nucleoside base modifications and shows a preference among different tRNA species. Acts in the absence of ATP to form a 2'-5' phosphodiester linkage [H]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081692, Length=176, Percent_Identity=98.8636363636364, Blast_Score=355, Evalue=1e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19983; Mature: 19852

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPQRLFFAIDLPAEIREQIIRWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKAL
CCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEHHCCCHHHHHHH
SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR
HHHHHHHCCCCCEEEECHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PFHPHITLLRDASEAVTIPPPGFNWSYTVTEFTLYASSFARGRTRYTPLKRWALTQ
CCCCCEEEEECCCCEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
SEPQRLFFAIDLPAEIREQIIRWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKAL
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEHHCCCHHHHHHH
SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR
HHHHHHHCCCCCEEEECHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PFHPHITLLRDASEAVTIPPPGFNWSYTVTEFTLYASSFARGRTRYTPLKRWALTQ
CCCCCEEEEECCCCEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 2013578; 8940112 [H]