Click here to switch to the map view.

The map label for this gene is yaaJ [H]

Identifier: 218687884

GI number: 218687884

Start: 6124

End: 7554

Strand: Reverse

Name: yaaJ [H]

Synonym: ECED1_0006

Alternate gene names: 218687884

Gene position: 7554-6124 (Counterclockwise)

Preceding gene: 218687887

Following gene: 218687883

Centisome position: 0.15

GC content: 53.39

Gene sequence:

>1431_bases
ATGCCAGATTTTTTCTCCTTTATTAACAGCGTCCTTTGGGGATCGGTAATGATTTACCTGCTCTTCGGCGCAGGTTGTTG
GTTCACTTTTCGCACCGGATTTGTGCAGTTTCGCTACATCCGCCAGTTTGGCAAAAGTCTTAAAAATAGCATTCATCCAC
AGCCAGGCGGTTTAACCTCATTTCAGTCATTGTGTACCAGTCTTGCAGCGCGCGTGGGTAGCGGCAACCTGGCCGGCGTT
GCGCTGGCAATTACCGCCGGTGGACCTGGAGCCGTCTTCTGGATGTGGGTTGCCGCATTTATCGGCATGGCGACCTCGTT
TGCCGAATGTTCCCTCGCACAGCTTTATAAAGAACGTGATGCCAATGGGCAGTTTCGTGGCGGACCGGCATGGTATATGG
CGCGCGGGCTGGGGATGCGCTGGATGGGCGTTCTGTTCGCCGTCTTTTTGCTCATCGCCTACGCCATAATTTTCAGCGGA
GTTCAGGCGAACGCCGTTGCGCGAGCCCTGAGTTTTTCTTTTGATTTTCCCCCGCTGGTGACAGGTATTATTCTCGCTGT
CTTTGCTATGCTGGCGATCACTCGCGGTCTTCATGGCGTCGCCCGGCTCATGCAGGGGTTTGTCCCGTTGATGGCGATAA
TCTGGGTACTGACCTGCCTGGTGATTTGCGTAATGAATATCGGGCAACTTCCCCACGTCATTTGGTCTATTTTTGAGAGT
GCTTTTGGCTGGCAGGAAGCTGCAGGCGGCGCGGCGGGATATACCTTAAGCCAGGCGATTACTAACGGTTTTCAGCGCAG
TATGTTTTCCAATGAGGCGGGAATGGGGTCGACGCCAAACGCGGCAGCGGCAGCTGCGTCCTGGCCTCCGCATCCGGCAG
CGCAAGGAATTGTCCAGATGATTGGCATTTTTATCGACACCCTGGTCATCTGCACGGCAAGCGCCATGCTGATATTACTG
GCGGGTAACGGCACAACCTACATGCCGCTGGAAGGTATTCAGCTTATCCAGAAGGCGATGCGGGTGCTAATGGGTTCCTG
GGGTGCGGAGTTTGTTACCCTCGTGGTTATTCTGTTTGCCTTCAGCTCCATCGTTGCCAACTACATTTATGCCGAAAACA
ATCTCTTCTTTTTACGCCTGAACAACCCTAAAGCGATCTGGTGTCTGCGGATCTGCACCTTCGCAACGGTCATCGGCGGC
ACCTTGCTAAGTTTTCCGCTGATGTGGCAACTGGCAGATATCATTATGGCCTGCATGACTATTACCAATTTGACCGCCAT
ATTACTGCTCTCGCCTGTGGTTCATACCATTGCCAGTGATTATCTACGCCAGCGTAAACTCGGCGTGCGCCCGGTGTTTT
ATCCGTTGCGTTATCCGGAGATCGGTCGCCAGCTTTCTCCAGACGCGTGGGATGATGTTTCGCAGGAGTAA

Upstream 100 bases:

>100_bases
ACGCAGAAGTTATCAAGTACCTCGTAGCGTATATACTTCTTAAACAATTGGTAACGTTTACACAGGAAAGTCATCGCGAC
CGGCAATAAGAGGGATATGC

Downstream 100 bases:

>100_bases
TCACAACTATCGATCAACTCATTCTCTTTTTTTGCTAAAGTCGGCATAAATTTCCTGCAAGGACTGGATATGCTGATTCT
TATTTCACCTGCGAAAACGC

Product: putative amino acid sodium/proton transporter

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGV
ALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDANGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYAIIFSG
VQANAVARALSFSFDFPPLVTGIILAVFAMLAITRGLHGVARLMQGFVPLMAIIWVLTCLVICVMNIGQLPHVIWSIFES
AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILL
AGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGG
TLLSFPLMWQLADIIMACMTITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFYPLRYPEIGRQLSPDAWDDVSQE

Sequences:

>Translated_476_residues
MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGV
ALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDANGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYAIIFSG
VQANAVARALSFSFDFPPLVTGIILAVFAMLAITRGLHGVARLMQGFVPLMAIIWVLTCLVICVMNIGQLPHVIWSIFES
AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILL
AGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGG
TLLSFPLMWQLADIIMACMTITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFYPLRYPEIGRQLSPDAWDDVSQE
>Mature_475_residues
PDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVA
LAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDANGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYAIIFSGV
QANAVARALSFSFDFPPLVTGIILAVFAMLAITRGLHGVARLMQGFVPLMAIIWVLTCLVICVMNIGQLPHVIWSIFESA
FGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLA
GNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGT
LLSFPLMWQLADIIMACMTITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFYPLRYPEIGRQLSPDAWDDVSQE

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=476, Percent_Identity=98.109243697479, Blast_Score=942, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 51780; Mature: 51649

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD
HHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ANGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYAIIFSGVQANAVARALSFSFDFPPLV
CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH
TGIILAVFAMLAITRGLHGVARLMQGFVPLMAIIWVLTCLVICVMNIGQLPHVIWSIFES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQM
HCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHH
IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA
HHHHHHHHHHHHHHHHEEEEECCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSFPLMWQLADIIMACMT
HHHHHHHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFYPLRYPEIGRQLSPDAWDDVSQE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]