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The map label for this gene is yjcO [H]

Identifier: 218551510

GI number: 218551510

Start: 4399487

End: 4400176

Strand: Direct

Name: yjcO [H]

Synonym: EFER_4294

Alternate gene names: 218551510

Gene position: 4399487-4400176 (Clockwise)

Preceding gene: 218551509

Following gene: 218551512

Centisome position: 95.88

GC content: 46.38

Gene sequence:

>690_bases
ATGAAACGATTATTTGCATTGATGTTTTTACTAACATTCTTTGCCCATGCCGACGAACCGCAGCCCGGAAGCCAATATCT
GCAAGCGGCAGAAGCCGGTGACAGACGAGCACAGTATTTTCTTGCTGATAGCTGGCTTAGTTCCGGCAATCTCAGCAAGG
CGGAATACTGGGCGCAAAAAGCAGCTGATAATGGTGATGCTGATGCCTGTGCTTTACTGGCACAAATCAAAATCACCAAT
CCGGTAAGTCTGGATTATCCACAAGCAAAAATTCTGGCTGAAAAAGCTGCTCAGGCAGGGAGTAAAGAAGGCGAAGTCAC
GCTGGCGCATATTCTGGTAAATACCCAGGCAGGTAAACCTGACTATCCGAAAGCTATTTCATTACTCGAAAATGCCTCTG
AGGATTTGGAAAACGACTCTGCCGTTGATGCTCAGATGCTGTTAGGGCTTATTTATGCGAACGGCGTGGGCATTCCCGCC
GATGACGAAAAAGCGACCTGGTATTTCAAGCGCAGTTCTGCCATTTCACGCACCGGTTATTCAGAATATTGGGCGGGAAT
GATGTTCTTAAACGGTGAAGAAGGTTTTATCGAGAAGAATAAACAGAAGGCGCTGCACTGGTTAAATCTGAGCTGTATGG
AAGGGTTTGATACCGGGTGCGAAGAGTTCGAAAAATTAACTAACGGTTAA

Upstream 100 bases:

>100_bases
ACTGGCGTAAATCCCTCCACAACAGCCTCCAGCCGGAGGCTGTTTTTTTTCCATGCATTCTATTTATACTGTCTACTCCT
TACCCTACATAAAAATGAAA

Downstream 100 bases:

>100_bases
ACGGCGCATTCAGCACGAGGTCGGATACGGCGTTAACGCCTTATCCGACCTGAAAAAATCACGCTAAATCAGACTATTGC
GCAGTTTTATCAAATTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKRLFALMFLLTFFAHADEPQPGSQYLQAAEAGDRRAQYFLADSWLSSGNLSKAEYWAQKAADNGDADACALLAQIKITN
PVSLDYPQAKILAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIPA
DDEKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG

Sequences:

>Translated_229_residues
MKRLFALMFLLTFFAHADEPQPGSQYLQAAEAGDRRAQYFLADSWLSSGNLSKAEYWAQKAADNGDADACALLAQIKITN
PVSLDYPQAKILAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIPA
DDEKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
>Mature_229_residues
MKRLFALMFLLTFFAHADEPQPGSQYLQAAEAGDRRAQYFLADSWLSSGNLSKAEYWAQKAADNGDADACALLAQIKITN
PVSLDYPQAKILAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIPA
DDEKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790515, Length=229, Percent_Identity=93.0131004366812, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 25154; Mature: 25154

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLFALMFLLTFFAHADEPQPGSQYLQAAEAGDRRAQYFLADSWLSSGNLSKAEYWAQK
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
AADNGDADACALLAQIKITNPVSLDYPQAKILAEKAAQAGSKEGEVTLAHILVNTQAGKP
HCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
DYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIPADDEKATWYFKRSSAISRTGY
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCC
SEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
HHHHHEEEEECCCCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MKRLFALMFLLTFFAHADEPQPGSQYLQAAEAGDRRAQYFLADSWLSSGNLSKAEYWAQK
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
AADNGDADACALLAQIKITNPVSLDYPQAKILAEKAAQAGSKEGEVTLAHILVNTQAGKP
HCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
DYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIPADDEKATWYFKRSSAISRTGY
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCC
SEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG
HHHHHEEEEECCCCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]