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The map label for this gene is ubiD [H]

Identifier: 218550913

GI number: 218550913

Start: 3728315

End: 3729808

Strand: Reverse

Name: ubiD [H]

Synonym: EFER_3639

Alternate gene names: 218550913

Gene position: 3729808-3728315 (Counterclockwise)

Preceding gene: 218550915

Following gene: 218550912

Centisome position: 81.28

GC content: 54.48

Gene sequence:

>1494_bases
ATGGACGCCATGAAATATAACGATTTACGCGACTTCCTGACGCTGCTTGAACAGCAGGGTGAGCTAAAACGTATCACGCT
CCCGGTGGATCCGCATCTGGAAATCACTGAAATTGCTGACCGCACTTTGCGTGCCGGTGGGCCTGCGTTGTTGTTCGAAA
ACCCTAAAGGCTACTCAATGCCGGTGCTGTGCAACCTGTTCGGTACGCCAAAGCGCGTGGCGATGGGCATGGGGCAGGAA
GATGTTTCGGCGCTGCGTGAAGTGGGTAAATTATTGGCGTTTCTGAAAGAGCCGGAGCCGCCAAAAGGTTTCCGCGACCT
GTTTGATAAACTGCCGCAGTTTAAGCAAGTATTGAACATGCCGACAAAGCGACTGCGTGGTGCGCCCTGCCAACAAAAAA
TCGTCTCTGGCGATGACGTCGATCTCAATCGCATTCCCATTATGACCTGCTGGCCGGAAGATGCCGCGCCGCTGATTACC
TGGGGGCTGACCGTAACGCGCGGCCCACATAAAGAGCGGCAGAATTTGGGCATTTATCGCCAGCAGCTGATTGGTAAAAA
CAAACTGATTATGCGCTGGCTGTCGCATCGCGGCGGCGCGCTGGATTATCAGGAGTGGTGTGCGGCGCATCCGGGCGAAC
GTTTCCCGGTTTCTGTGGCGCTGGGTGCCGATCCCGCCACGATTCTCGGTGCAGTCACCCCCGTTCCGGATACGCTTTCA
GAGTATGCGTTTGCCGGATTGCTGCGCGGCACCAAGACCGAAGTGGTGAAGTGTATCTCCAATGACCTTGAAGTGCCCGC
CAGTGCGGAGATTGTGCTGGAAGGGTATATCGAACAAGGCGAAACGGCGCCGGAAGGGCCGTATGGCGACCACACCGGTT
ACTATAACGAAGTCGATAGTTTCCCGGTATTCACCGTGACGCATATTACCCAGCGTGAAGATGCGATTTACCATTCCACC
TATACCGGGCGTCCGCCAGATGAACCCGCGGTACTGGGCGTAGCGTTGAACGAAGTGTTCGTGCCGATTCTGCAAAAACA
GTTCCCGGAAATTGTCGATTTTTACCTGCCGCCGGAAGGCTGTTCTTATCGTCTGGCGGTAGTGACAATCAAAAAACAGT
ACGCCGGACACGCGAAGCGCGTCATGATGGGCGTCTGGTCGTTCTTACGCCAGTTTATGTACACTAAATTTGTGATCGTT
TGTGATGATGACGTCAACGCACGCGACTGGAACGATGTGATTTGGGCGATTACCACCCGTATGGACCCGGCGCGGGATAC
GGTGTTGGTCGAAAACACGCCCATTGATTATCTGGATTTTGCCTCGCCTGTTTCCGGGCTGGGTTCAAAAATGGGGCTGG
ATGCCACGAATAAATGGCCGGGGGAAACTCAGCGTGAGTGGGGGCGTCCCATCAAAAAAGATCCGGATGTTGTCGCGCAT
ATTGACGCCATCTGGGATGAACTGGCCATCTTCAACAACGGTAAAAACGCCTGA

Upstream 100 bases:

>100_bases
CCCCGGTTTGCGTTATACCGTCAGAGTTCACGCTAATTTAACAAATTTACAGCATCGCAAAGATGAACGCCGTATAATGG
GCGCAGATTAAGAGGCTACA

Downstream 100 bases:

>100_bases
TGCGCGTTTGTTTTGCCCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGA
AGCTATCACTGATACCGTAT

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQE
DVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS
EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHST
YTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIV
CDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH
IDAIWDELAIFNNGKNA

Sequences:

>Translated_497_residues
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQE
DVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS
EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHST
YTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIV
CDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH
IDAIWDELAIFNNGKNA
>Mature_497_residues
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQE
DVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS
EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHST
YTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIV
CDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH
IDAIWDELAIFNNGKNA

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=497, Percent_Identity=99.7987927565392, Blast_Score=1027, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=448, Percent_Identity=26.3392857142857, Blast_Score=144, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55631; Mature: 55631

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSM
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC
PVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNM
CEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
PTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYR
CHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEECEEECCCCCHHHHHHHHHH
QQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS
HHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCHHHH
EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDS
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
FPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEG
CCEEEEEEECCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEECCCCC
CSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTR
CCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEC
MDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH
CCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHH
IDAIWDELAIFNNGKNA
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSM
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC
PVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNM
CEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
PTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYR
CHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEECEEECCCCCHHHHHHHHHH
QQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLS
HHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCCCHHHH
EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDS
HHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
FPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEG
CCEEEEEEECCCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEECCCCC
CSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTR
CCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEC
MDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH
CCCCCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHH
IDAIWDELAIFNNGKNA
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA