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The map label for this gene is yibD [H]

Identifier: 218550893

GI number: 218550893

Start: 3698307

End: 3699341

Strand: Reverse

Name: yibD [H]

Synonym: EFER_3609

Alternate gene names: 218550893

Gene position: 3699341-3698307 (Counterclockwise)

Preceding gene: 218550894

Following gene: 218550889

Centisome position: 80.62

GC content: 42.51

Gene sequence:

>1035_bases
ATGATGAACAGTGCAAATAAACTTAGTGTTATTATCCCGTTATATAATGCGGGAAATGATTTTAACGCCTGCATGGAATC
TTTAATCGCGCAAACCTGGACTGCTCTGGAAATCATTATTGTTAACGATGGTTCAACAGATAATTCCGTTGAAATAGCAA
AATATTATGCAAAAAATTATTCGCATGTTCGTTTGCTGCATCAGGCGAATGCTGGCGCATCGGTAGCGCGTAATCGCGGG
ATCGAGGCAGCGACGGGCAAATATGTCGCTTTTGTCGATGCTGATGATGAGGTCTATCCCACCATGTACGAAACGCTGAT
GACGATGGCGTTAGAGGATGATCTCGATGTGGCACAAGGTAACGCCGACTGGTGCGTACGTGAAACGGGCAGAACATGGC
AATCTATTCCAGGTGATCGTATTCGTTCAACAGGCGTTTTAAATGGCCCGGAATGGCTGCGATTAGCGCTTGCTTCTCGC
CGCTGGACACACGTGGTGTGGATGGGCGTTTATCGCCGGGAAATTCTTATTAAAAACAATATTAAATTTATTCCCGGTTT
GCATCATCAGGATATTATCTGGAGCACCGAGGTCATGTTTAATGCCTTGCGTGTACGTTATACCGAACAATCTTTATATA
AGTACTTTTTACATAATAACTCAATAAGTCGTTTGAAAAGACAAGGGAATAAAAACCTTAATTATCAACGGCACTATATT
AAAATTACCCGCTTGTTGGAAAAGTTAAATCGTGATTATGCTGATAAAATTCCGATTTATCCAGAATTCCATCAGCAAAT
AAGTTATGAAGCATTACGTGTTTGCCATGCAGTACGAAAAGAACCCGATCTTTTTACCCGTCAGCGCATGATTGCCGAAA
TTTTTACTTCCGGTATGTATAAACGCATGGTGACTAATGTGCGCAGCGCTAAGGTCGGTTATCAGGTCTTGCTGTGGTCT
TTGCGTCTGTGGCAATGGCGCGACAAAACATTGTCGCACCAACAAAATGCACGCAAAGCGCTTAATCTGAATTAG

Upstream 100 bases:

>100_bases
CGTTACGCTAATTCGTAATATTAATATCTCGCCCACTTAATAGTTTCTTAATACAAAGTCTGTACAAAGACAGGGTTACT
TCAGAGGTAGTCGGTAATTT

Downstream 100 bases:

>100_bases
CGTTTGCGGTATTGGCGGGTGTCCTCCCCCAGCCTTGCCATTGATTGCGGATGTAGTTCACCAGCGTACTCTGACTGATG
CTTTCGCTCAGCACGCTAAA

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MMNSANKLSVIIPLYNAGNDFNACMESLIAQTWTALEIIIVNDGSTDNSVEIAKYYAKNYSHVRLLHQANAGASVARNRG
IEAATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQGNADWCVRETGRTWQSIPGDRIRSTGVLNGPEWLRLALASR
RWTHVVWMGVYRREILIKNNIKFIPGLHHQDIIWSTEVMFNALRVRYTEQSLYKYFLHNNSISRLKRQGNKNLNYQRHYI
KITRLLEKLNRDYADKIPIYPEFHQQISYEALRVCHAVRKEPDLFTRQRMIAEIFTSGMYKRMVTNVRSAKVGYQVLLWS
LRLWQWRDKTLSHQQNARKALNLN

Sequences:

>Translated_344_residues
MMNSANKLSVIIPLYNAGNDFNACMESLIAQTWTALEIIIVNDGSTDNSVEIAKYYAKNYSHVRLLHQANAGASVARNRG
IEAATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQGNADWCVRETGRTWQSIPGDRIRSTGVLNGPEWLRLALASR
RWTHVVWMGVYRREILIKNNIKFIPGLHHQDIIWSTEVMFNALRVRYTEQSLYKYFLHNNSISRLKRQGNKNLNYQRHYI
KITRLLEKLNRDYADKIPIYPEFHQQISYEALRVCHAVRKEPDLFTRQRMIAEIFTSGMYKRMVTNVRSAKVGYQVLLWS
LRLWQWRDKTLSHQQNARKALNLN
>Mature_344_residues
MMNSANKLSVIIPLYNAGNDFNACMESLIAQTWTALEIIIVNDGSTDNSVEIAKYYAKNYSHVRLLHQANAGASVARNRG
IEAATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQGNADWCVRETGRTWQSIPGDRIRSTGVLNGPEWLRLALASR
RWTHVVWMGVYRREILIKNNIKFIPGLHHQDIIWSTEVMFNALRVRYTEQSLYKYFLHNNSISRLKRQGNKNLNYQRHYI
KITRLLEKLNRDYADKIPIYPEFHQQISYEALRVCHAVRKEPDLFTRQRMIAEIFTSGMYKRMVTNVRSAKVGYQVLLWS
LRLWQWRDKTLSHQQNARKALNLN

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=343, Percent_Identity=85.7142857142857, Blast_Score=634, Evalue=0.0,
Organism=Escherichia coli, GI1787259, Length=90, Percent_Identity=34.4444444444444, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40097; Mature: 40097

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNSANKLSVIIPLYNAGNDFNACMESLIAQTWTALEIIIVNDGSTDNSVEIAKYYAKNY
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHCCC
SHVRLLHQANAGASVARNRGIEAATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQG
HHEEEEECCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
NADWCVRETGRTWQSIPGDRIRSTGVLNGPEWLRLALASRRWTHVVWMGVYRREILIKNN
CCCEEEECCCCHHHCCCCCHHHCCCCCCCHHHHHHHHHHCCHHHHEEHHHHHHHEEEECC
IKFIPGLHHQDIIWSTEVMFNALRVRYTEQSLYKYFLHNNSISRLKRQGNKNLNYQRHYI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRDYADKIPIYPEFHQQISYEALRVCHAVRKEPDLFTRQRMIAEIFTSGMY
HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KRMVTNVRSAKVGYQVLLWSLRLWQWRDKTLSHQQNARKALNLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMNSANKLSVIIPLYNAGNDFNACMESLIAQTWTALEIIIVNDGSTDNSVEIAKYYAKNY
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHCCC
SHVRLLHQANAGASVARNRGIEAATGKYVAFVDADDEVYPTMYETLMTMALEDDLDVAQG
HHEEEEECCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
NADWCVRETGRTWQSIPGDRIRSTGVLNGPEWLRLALASRRWTHVVWMGVYRREILIKNN
CCCEEEECCCCHHHCCCCCHHHCCCCCCCHHHHHHHHHHCCHHHHEEHHHHHHHEEEECC
IKFIPGLHHQDIIWSTEVMFNALRVRYTEQSLYKYFLHNNSISRLKRQGNKNLNYQRHYI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRDYADKIPIYPEFHQQISYEALRVCHAVRKEPDLFTRQRMIAEIFTSGMY
HHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KRMVTNVRSAKVGYQVLLWSLRLWQWRDKTLSHQQNARKALNLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]