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The map label for this gene is yiaI [H]

Identifier: 218550855

GI number: 218550855

Start: 3656413

End: 3657006

Strand: Reverse

Name: yiaI [H]

Synonym: EFER_3571

Alternate gene names: 218550855

Gene position: 3657006-3656413 (Counterclockwise)

Preceding gene: 218550856

Following gene: 218550852

Centisome position: 79.7

GC content: 52.02

Gene sequence:

>594_bases
TTGAGCGAACGATCAAAACTTGATGAAATTCTGACAAATTTTTCTCGTACCCCTTTTTTGATCAAGGCGAGAATGATATT
TCGTCTGGCACTCTTAGCGTTTTACGACGGGGGGAAGGGAATGAACCGATTTATTATGGCCGATGCTGGTAAGTGTATCG
GCTGTCGCACCTGCGAGGTGGCTTGTGCGGTGTCGCATCAACAAAATCAGGATTGTGCCGCACTGTCGCCTGCCGAAATG
GTGTCGCGTATTCGGGTAATCAAAGATCAAGCCTTTACCACGGCGGTTGCCTGTCATCAGTGCGAAGATGCCCCGTGTGC
AAATGTCTGTCCGGTACAGGCGATTCGCCGTGAACGAGGGCATATCTTTGTAGAACAGTCGCGTTGTATTGGCTGCAAGA
GCTGCATGTTGGCTTGCCCGTTTGGGGCGATGAGAGTTGTTGCGCAGGAATCTCAGGTGCAGGCGATTAAATGCGATCTC
TGTTGGCATCGGGATAACGGGCCTGCCTGCGTTGAAGCTTGCCCGACACATGCGTTGCAGTGCGTGGATGCGATGCAAGT
ACAGCGTCAGCGGCTGCGGCAACAACCTGTTTAA

Upstream 100 bases:

>100_bases
CGACGTCACGTCTTAAACAAATCGGCGAAAGCAATCTGCTTAAGCCGCTACAGGAAACCGCTCAGGCAATTTCCCGCGAG
CTTGGCTTTACGGTACGTGA

Downstream 100 bases:

>100_bases
AACATCCCCGGCCTGTTTCAGTGCCGGGGTGCTTGATTAATGACTTTCCGCCCAGGCGCGTTCAATCTCTTCTGCCAGAA
TCTTCACGCCCTCTTCAATT

Product: hydrogenase, 4Fe-4S ferredoxin-type component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSERSKLDEILTNFSRTPFLIKARMIFRLALLAFYDGGKGMNRFIMADAGKCIGCRTCEVACAVSHQQNQDCAALSPAEM
VSRIRVIKDQAFTTAVACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAIKCDL
CWHRDNGPACVEACPTHALQCVDAMQVQRQRLRQQPV

Sequences:

>Translated_197_residues
MSERSKLDEILTNFSRTPFLIKARMIFRLALLAFYDGGKGMNRFIMADAGKCIGCRTCEVACAVSHQQNQDCAALSPAEM
VSRIRVIKDQAFTTAVACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAIKCDL
CWHRDNGPACVEACPTHALQCVDAMQVQRQRLRQQPV
>Mature_196_residues
SERSKLDEILTNFSRTPFLIKARMIFRLALLAFYDGGKGMNRFIMADAGKCIGCRTCEVACAVSHQQNQDCAALSPAEMV
SRIRVIKDQAFTTAVACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAIKCDLC
WHRDNGPACVEACPTHALQCVDAMQVQRQRLRQQPV

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367245, Length=157, Percent_Identity=80.8917197452229, Blast_Score=266, Evalue=5e-73,
Organism=Escherichia coli, GI1789067, Length=167, Percent_Identity=58.0838323353293, Blast_Score=192, Evalue=1e-50,
Organism=Escherichia coli, GI1788811, Length=147, Percent_Identity=52.3809523809524, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI87082179, Length=153, Percent_Identity=42.483660130719, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI87082180, Length=156, Percent_Identity=42.9487179487179, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1789079, Length=187, Percent_Identity=36.3636363636364, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI87082114, Length=190, Percent_Identity=34.7368421052632, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1787122, Length=154, Percent_Identity=33.7662337662338, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787872, Length=154, Percent_Identity=33.1168831168831, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI226510944, Length=177, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787963, Length=155, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI2367345, Length=170, Percent_Identity=32.3529411764706, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787749, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790326, Length=155, Percent_Identity=27.741935483871, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789370, Length=163, Percent_Identity=28.2208588957055, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 21871; Mature: 21740

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
13.2 %Cys+Met (Translated Protein)
9.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
12.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERSKLDEILTNFSRTPFLIKARMIFRLALLAFYDGGKGMNRFIMADAGKCIGCRTCEV
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHH
ACAVSHQQNQDCAALSPAEMVSRIRVIKDQAFTTAVACHQCEDAPCANVCPVQAIRRERG
HEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
HIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAIKCDLCWHRDNGPACVEACPTHALQ
CEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHH
CVDAMQVQRQRLRQQPV
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SERSKLDEILTNFSRTPFLIKARMIFRLALLAFYDGGKGMNRFIMADAGKCIGCRTCEV
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHH
ACAVSHQQNQDCAALSPAEMVSRIRVIKDQAFTTAVACHQCEDAPCANVCPVQAIRRERG
HEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
HIFVEQSRCIGCKSCMLACPFGAMRVVAQESQVQAIKCDLCWHRDNGPACVEACPTHALQ
CEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHH
CVDAMQVQRQRLRQQPV
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]