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The map label for this gene is xylA [H]

Identifier: 218550850

GI number: 218550850

Start: 3648910

End: 3650232

Strand: Reverse

Name: xylA [H]

Synonym: EFER_3566

Alternate gene names: 218550850

Gene position: 3650232-3648910 (Counterclockwise)

Preceding gene: 218550852

Following gene: 218550849

Centisome position: 79.55

GC content: 50.64

Gene sequence:

>1323_bases
ATGCAGGCTTATTTTGATCAACTCGACCGTGTTCGTTACGAAGGCCCGAAAACCACTAACCCGTTAGCATTCCGCCATTA
CAATCCTGATGAGCTGGTACTGGGTAAACGTATGGAAGATCACTTGCGTTTTGCTGCCTGCTACTGGCATACCTTCTGCT
GGAACGGTGCGGATATGTTTGGTGTTGGCGCGTTTGATCGCCCATGGCAACAGCCGGGTGAAGCGCTAATGCTGGCGAAA
CGTAAAGCTGACGTAGCCTTTGAATTCTTCCACAAACTGAATGTACCGTTCTACTGTTTCCATGATGTTGACGTGTCACC
AGAAGGCGCATCGCTGAAAGAGTACAAAAATAACTTCGCTGAAATGGTTGATGTGCTGGCAGCGAAACAAGAACAAAGCG
GTGTGAAACTGCTATGGGGTACAGCGAACTGCTTTACTAACCCACGCTACGGCGCAGGGGCGGCAACTAACCCGGATCCA
GAAGTCTTTAGTTGGGCGGCAACACAAGTGGTTACCGCGATGGAAGCAACCAAACGCTTGGGTGGTGAAAACTATGTACT
GTGGGGTGGTCGTGAAGGTTATGAAACCCTGCTGAATACCGATCTGCGTCAGGAGCGCGAACAACTTGGGCGCTTCATGC
AGATGGTTGTTGAGCACAAACACAAAATTGGCTTCCAGGGCACACTGCTGATTGAGCCGAAACCGCAGGAGCCAACCAAA
CACCAGTACGATTACGATGCCGCCACGGTATATGGCTTCCTGAAACAGTTTGGTCTGGAAAAAGAGATCAAACTGAATAT
CGAAGCTAACCATGCGACGCTGGCAGGTCACTCTTTCCACCACGAAATTGCCACCGCCATCGCGCTGGGGCTGTTCGGCT
CTGTTGATGCCAACCGTGGTGATGCGCAATTGGGCTGGGATACCGACCAGTTCCCGAACAGCGTGGAAGAGAATGCGCTG
GTGATGTATGAAATCCTTAAAGCGGGTGGCTTTACCACCGGTGGTCTGAACTTCGACGCCAAAGTTCGTCGTCAGAGCAC
CGATAAATACGATTTGTTCTACGGTCATATTGGCGCAATGGATACTATGGCGCTGGCATTGAAAGTGGCTGCCCGTATGA
TTGAAGACGGTGAACTGGACAAACGTGTGGCGCAGCGTTACTCCGGCTGGAATAGCGAGCTGGGTCAGCAAATTCTGAAA
GGCCAGATGTCACTGAGTGACCTGGCAAAATATGCCCAGGACCATAATCTGTCTCCGGTCCATCAGAGCGGTCACCAGGA
ATTACTGGAAAGTCTGGTGAATCATTATTTGTTCGATAAATAA

Upstream 100 bases:

>100_bases
TAATTCGGGTGTGAAATAACGTAATTGAGCATCAAATCAGGAAATTCCAGTATTAAGGCATCGAAGTTACTCGCCGTATT
ACCTGATTAGGGAGTTCAAT

Downstream 100 bases:

>100_bases
TCGTTAACAAAGACAGTCCCTGAGCCCGGTAAGCGGTAGCGATACCGGGCATTTTTGTAAGGAATGATCGCTATGTATAT
CGGGATAGATCTTGGTACAT

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQAYFDQLDRVRYEGPKTTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFDRPWQQPGEALMLAK
RKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFAEMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSWAATQVVTAMEATKRLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK
HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKVAARMIEDGELDKRVAQRYSGWNSELGQQILK
GQMSLSDLAKYAQDHNLSPVHQSGHQELLESLVNHYLFDK

Sequences:

>Translated_440_residues
MQAYFDQLDRVRYEGPKTTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFDRPWQQPGEALMLAK
RKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFAEMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSWAATQVVTAMEATKRLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK
HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKVAARMIEDGELDKRVAQRYSGWNSELGQQILK
GQMSLSDLAKYAQDHNLSPVHQSGHQELLESLVNHYLFDK
>Mature_440_residues
MQAYFDQLDRVRYEGPKTTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGAFDRPWQQPGEALMLAK
RKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFAEMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
EVFSWAATQVVTAMEATKRLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK
HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENAL
VMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKVAARMIEDGELDKRVAQRYSGWNSELGQQILK
GQMSLSDLAKYAQDHNLSPVHQSGHQELLESLVNHYLFDK

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=440, Percent_Identity=95.2272727272727, Blast_Score=885, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49743; Mature: 49743

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAYFDQLDRVRYEGPKTTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
GVGAFDRPWQQPGEALMLAKRKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFA
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
EMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMEATKRL
HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCHHCCCCHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEHHHHHH
DTMALALKVAARMIEDGELDKRVAQRYSGWNSELGQQILKGQMSLSDLAKYAQDHNLSPV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHH
HQSGHQELLESLVNHYLFDK
HHCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQAYFDQLDRVRYEGPKTTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMF
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
GVGAFDRPWQQPGEALMLAKRKADVAFEFFHKLNVPFYCFHDVDVSPEGASLKEYKNNFA
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
EMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMEATKRL
HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVEHKHKIGFQGTLLIEPKPQEPTK
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRG
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCC
DAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM
CCCCCCCCHHCCCCHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEHHHHHH
DTMALALKVAARMIEDGELDKRVAQRYSGWNSELGQQILKGQMSLSDLAKYAQDHNLSPV
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHH
HQSGHQELLESLVNHYLFDK
HHCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA