Click here to switch to the map view.

The map label for this gene is dcrB [H]

Identifier: 218550735

GI number: 218550735

Start: 3513689

End: 3514300

Strand: Direct

Name: dcrB [H]

Synonym: EFER_3446

Alternate gene names: 218550735

Gene position: 3513689-3514300 (Clockwise)

Preceding gene: 218550734

Following gene: 218550737

Centisome position: 76.57

GC content: 47.22

Gene sequence:

>612_bases
GTGATAAGATGGGTGAATGAGCCGTTATGGCCGTTTATCGAAAGGAAGAAGTCAATGCGCAATCTGGTTAAATATGTCGG
TATTGGTCTGCTGGTTATGGGGCTTGCGGCTTGTGATGACAAAGACACCAACGCTTCAACTGAAGGCACCGTTGCTGAAA
GCAATGCTGCCGGGCAATCAGTAAATTTGTTGGACGGTAAACTCAGTTTCCAGCTACCTGCAGACATGACTGATCAGAGT
GGCAAGCTGGGCACTCAGGCCAATAATATGCACGTTTACTCTGATGCCAGTGGGCAGAAAGCTGTCATTGTCATTATGGG
TGATGATCCTAACCTGGATCTGGCAGTGCTGGCGAAGCGTCTGGAAGATCAACAGCGCAGCCGTGACCCACAACTGCAGG
TCGTCACGAACAAAACCATCGAAGTTAATGGGCACAAGTTACAGCAGCTGGACAGTATTATCTCCGCAAAAGGCCAGACA
GCTTATTCTTCTGTTGTTTTAGGCAATGTAGATAAGCAATTGTTGACCATGCAAATTACGTTGCCAGCGGACGATCAACA
AAAAGCGCAAACCGCAGCGGAAAGCATCATTAACACTCTGGAAATTAAGTAA

Upstream 100 bases:

>100_bases
GCCGATGTATGGCGTATTACTCAATATGCTGTTGAAAAGACTGGCAGACAAATCTGAAATCAACGCATTGCAGGCGAGTT
AAAGGTACGTTATCAGAGTT

Downstream 100 bases:

>100_bases
CGACTACGATGATGAAGCGGTCTCCGACAGTGGTTGCGGAGGCCGTTTTTTTAACCGCCATGTTAGTAGTAATGCAATAA
CCACCAGCCCCGCCGCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MIRWVNEPLWPFIERKKSMRNLVKYVGIGLLVMGLAACDDKDTNASTEGTVAESNAAGQSVNLLDGKLSFQLPADMTDQS
GKLGTQANNMHVYSDASGQKAVIVIMGDDPNLDLAVLAKRLEDQQRSRDPQLQVVTNKTIEVNGHKLQQLDSIISAKGQT
AYSSVVLGNVDKQLLTMQITLPADDQQKAQTAAESIINTLEIK

Sequences:

>Translated_203_residues
MIRWVNEPLWPFIERKKSMRNLVKYVGIGLLVMGLAACDDKDTNASTEGTVAESNAAGQSVNLLDGKLSFQLPADMTDQS
GKLGTQANNMHVYSDASGQKAVIVIMGDDPNLDLAVLAKRLEDQQRSRDPQLQVVTNKTIEVNGHKLQQLDSIISAKGQT
AYSSVVLGNVDKQLLTMQITLPADDQQKAQTAAESIINTLEIK
>Mature_203_residues
MIRWVNEPLWPFIERKKSMRNLVKYVGIGLLVMGLAACDDKDTNASTEGTVAESNAAGQSVNLLDGKLSFQLPADMTDQS
GKLGTQANNMHVYSDASGQKAVIVIMGDDPNLDLAVLAKRLEDQQRSRDPQLQVVTNKTIEVNGHKLQQLDSIISAKGQT
AYSSVVLGNVDKQLLTMQITLPADDQQKAQTAAESIINTLEIK

Specific function: Required for phage C1 adsorption [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082269, Length=185, Percent_Identity=87.5675675675676, Blast_Score=327, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014894 [H]

Pfam domain/function: PF08786 DUF1795 [H]

EC number: NA

Molecular weight: Translated: 22093; Mature: 22093

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRWVNEPLWPFIERKKSMRNLVKYVGIGLLVMGLAACDDKDTNASTEGTVAESNAAGQS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCE
VNLLDGKLSFQLPADMTDQSGKLGTQANNMHVYSDASGQKAVIVIMGDDPNLDLAVLAKR
EEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHH
LEDQQRSRDPQLQVVTNKTIEVNGHKLQQLDSIISAKGQTAYSSVVLGNVDKQLLTMQIT
HHHHHHCCCCCEEEEECCEEEECCHHHHHHHHHHHCCCCCHHHHEEECCCCCEEEEEEEE
LPADDQQKAQTAAESIINTLEIK
ECCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRWVNEPLWPFIERKKSMRNLVKYVGIGLLVMGLAACDDKDTNASTEGTVAESNAAGQS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCE
VNLLDGKLSFQLPADMTDQSGKLGTQANNMHVYSDASGQKAVIVIMGDDPNLDLAVLAKR
EEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHH
LEDQQRSRDPQLQVVTNKTIEVNGHKLQQLDSIISAKGQTAYSSVVLGNVDKQLLTMQIT
HHHHHHCCCCCEEEEECCEEEECCHHHHHHHHHHHCCCCCHHHHEEECCCCCEEEEEEEE
LPADDQQKAQTAAESIINTLEIK
ECCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8752353 [H]