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The map label for this gene is yrbK [H]

Identifier: 218550482

GI number: 218550482

Start: 3262260

End: 3262835

Strand: Direct

Name: yrbK [H]

Synonym: EFER_3176

Alternate gene names: 218550482

Gene position: 3262260-3262835 (Clockwise)

Preceding gene: 218550481

Following gene: 218550483

Centisome position: 71.09

GC content: 45.14

Gene sequence:

>576_bases
ATGAGTAAAGCCAGACGTTGGGTTATCATTCTGCTGTCGTTGGCCGTACTGGTGATGATTGGTATCAACCTGGCCGATAA
TGAAGATACTGCTCAGGTGGTGGTGAATAACAATGATCCCACATACAAAAGTGAGCATACGGACACATTAGTCTATAGCC
CGGAAGGCGCTCTAAGCTATCGGTTGATCGCGCAACATGTTGAATACTATTCCGATCAAGCTGTTTCGTGGTTTACTCAG
CCAGTTTTAACTACCTTTGATAAGGAAAAGGTTCCCACCTGGTCCATCAAAGCAGATAAAGCTAAGCTGACCAATGACCG
GATGCTGTATTTATACGGTCATGTTGAAGTCAACGCGCTGGTGCCTGACGCTCAACTACGCAGAATTACTACGGATAACG
CCCAGATCAACTTGATCACGCAGGATGTAACTTCTGAAGATCTCGTCACGTTATACGGTACGACATTTAACTCCAGCGGC
CTGAAAATGCGCGGCAACTTACGCAGCAAGAACGCCGAGCTGATTGAAAAGGTTAGAACCTCATATGAAATTCAAAATAA
ACAAACACAGCCTTAA

Upstream 100 bases:

>100_bases
ACGTGACCAGAATTGCAGGCGGACGCGGTGCCGTTCGTGAAGTCTGCGATCTGTTATTACTCGCACAGGGCAAGCTTGAT
GAGGCCAAAGGGCAATCGAT

Downstream 100 bases:

>100_bases
TCTTGCGCTTGCCAGCGCACTTCTGGCCGCCAGTATTCCGGCCCTCGCCGTAACTGGTGACACTGAACAGCCGATTCATA
TTGAATCTGATCAGCAGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSKARRWVIILLSLAVLVMIGINLADNEDTAQVVVNNNDPTYKSEHTDTLVYSPEGALSYRLIAQHVEYYSDQAVSWFTQ
PVLTTFDKEKVPTWSIKADKAKLTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLITQDVTSEDLVTLYGTTFNSSG
LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP

Sequences:

>Translated_191_residues
MSKARRWVIILLSLAVLVMIGINLADNEDTAQVVVNNNDPTYKSEHTDTLVYSPEGALSYRLIAQHVEYYSDQAVSWFTQ
PVLTTFDKEKVPTWSIKADKAKLTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLITQDVTSEDLVTLYGTTFNSSG
LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
>Mature_190_residues
SKARRWVIILLSLAVLVMIGINLADNEDTAQVVVNNNDPTYKSEHTDTLVYSPEGALSYRLIAQHVEYYSDQAVSWFTQP
VLTTFDKEKVPTWSIKADKAKLTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLITQDVTSEDLVTLYGTTFNSSGL
KMRGNLRSKNAELIEKVRTSYEIQNKQTQP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=191, Percent_Identity=94.2408376963351, Blast_Score=379, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21670; Mature: 21539

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKARRWVIILLSLAVLVMIGINLADNEDTAQVVVNNNDPTYKSEHTDTLVYSPEGALSY
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHH
RLIAQHVEYYSDQAVSWFTQPVLTTFDKEKVPTWSIKADKAKLTNDRMLYLYGHVEVNAL
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCEEEEEEEEEEEEEE
VPDAQLRRITTDNAQINLITQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
CCCHHHEEEECCCCEEEEEECCCCCCCEEEEEECEECCCCCEEECCCCCCCHHHHHHHHH
SYEIQNKQTQP
HHEECCCCCCC
>Mature Secondary Structure 
SKARRWVIILLSLAVLVMIGINLADNEDTAQVVVNNNDPTYKSEHTDTLVYSPEGALSY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCHHH
RLIAQHVEYYSDQAVSWFTQPVLTTFDKEKVPTWSIKADKAKLTNDRMLYLYGHVEVNAL
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCEEEEEEEEEEEEEE
VPDAQLRRITTDNAQINLITQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT
CCCHHHEEEECCCCEEEEEECCCCCCCEEEEEECEECCCCCEEECCCCCCCHHHHHHHHH
SYEIQNKQTQP
HHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]