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The map label for this gene is dacB [H]

Identifier: 218550465

GI number: 218550465

Start: 3248537

End: 3249970

Strand: Direct

Name: dacB [H]

Synonym: EFER_3159

Alternate gene names: 218550465

Gene position: 3248537-3249970 (Clockwise)

Preceding gene: 218550463

Following gene: 218550470

Centisome position: 70.79

GC content: 51.88

Gene sequence:

>1434_bases
ATGCGATTTTCCAGATTTATCATCGGATTGACCAGCTGTATAGCGTTCAGTGCTCAGGCCGCGAATGTTGATGAGTACAT
TACTCAACTCCCCGCTGGTGCCAACCTTGCCCTGATGGTGCAAAAAGTCGGCGCATCGGCACCCGCTATTGATTACCACA
GTCAGCAGATGGCGCTGCCCGCCAGTACGCAGAAAGTGATTACTGCGCTGGCGGCGTTGATTCAACTCGGCCCCGATTTT
CGTTTTACTACTACGCTTGAAACCAAAGGCAATGTGGAAAACGGCATACTCAAGGGTGACTTAGTGGCGCGATTTGGTGC
CGATCCGACGTTAAAACGTCAGGATATTCGCAATATGGTCACGACTTTGAAAAAATCTGGCGTCAACCAAATTGATGGTA
ATGTGTTGATAGATACCTCCATTTTTGCCAGCCACGATAAAGCCCCCGGCTGGCCGTGGAATGACATGACACAATGCTTT
AGCGCTCCGCCTGCCGCCGCCATAGTTGACCGCAACTGTTTCTCCGTCTCGCTCTACAGTGCCCAAAAACCCGGTGATAT
GGCCTTTATACGCGTGGCATCTTATTACCCCGTTACGATGTTCAGCCAGGTACGCACCCTCCCCCGTGGTTCTGCCGAAG
CGCAATATTGCGAGCTGGATGTGGTGCCAGGCGACCTGAACCGCTTTACGCTGACCGGATGCCTGCCACAACGTTCTGAG
CCGCTCCCGTTGGCTTTTGCCATACAGGATGGAGCCAGCTATGCCGGTGCAATTCTGAAAGATGAGTTAAAACAGGCAGG
TATCACCTGGAGCGGAACACTGCTGCGCCAGACTCAGGTTAATGAACCCGGAACGGTAGTTGCCAGTAAACAGTCGGCCC
CGTTGCACGATCTGCTTAAGATTATGCTGAAAAAGTCAGACAACATGATTGCCGATACGGTTTTCCGCATGATAGGCCAT
GCGCGCTTCAATGTGCCCGGAACATGGCGGGCCGGATCGGATGCCGTACGTCAGATCCTGCGTCAGCAAGCTGGTATCGA
TATTGGTAACACGATTATTGCCGATGGTTCAGGGCTTTCGCGGCATAACCTGATTGCACCTGCCACCATGATGCAGGTGC
TGCAATACATTGCCCAACATGACAATGAACTTAACTTTATCTCTATGCTGCCGCTGGCAGGCTATGACGGCTCTTTGCAG
TACCGTGCGGGCCTGCATCAGGCTGGCGTGGACGGAAAAGTCTCAGCAAAAACCGGCTCTTTGCAGGGGGTATATAACCT
GGCGGGATTCATTACCACAGCGAGCGGGCAACGAATGGCGTTTGTACAATATCTTTCTGGCTATGCGGTAGAACCCGCGG
ATCAGCGTAATCGCCGCATTCCGTTAGTGCGTTTTGAAAGCCGTTTGTATAAAGATATTTATCAGAATAATTAG

Upstream 100 bases:

>100_bases
ATAGTCATTTTACCCTGAAGTTCCCGCAGGGTCATCGTTTACTTTATAGGGCGTTGCGCCGTAGTATGACGGCTCGATTC
CAGGTTGTTAGCGCGAGATT

Downstream 100 bases:

>100_bases
TCTAAAGAGAAACCCCGGCACATGGCCGGGGTTTAGCTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCT
TCGTCCCAGTCGTCATCCCA

Product: D-alanyl-D-alanine carboxypeptidase/endopeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MRFSRFIIGLTSCIAFSAQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDF
RFTTTLETKGNVENGILKGDLVARFGADPTLKRQDIRNMVTTLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
SAPPAAAIVDRNCFSVSLYSAQKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAIQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGH
ARFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN

Sequences:

>Translated_477_residues
MRFSRFIIGLTSCIAFSAQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDF
RFTTTLETKGNVENGILKGDLVARFGADPTLKRQDIRNMVTTLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
SAPPAAAIVDRNCFSVSLYSAQKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAIQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGH
ARFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
>Mature_477_residues
MRFSRFIIGLTSCIAFSAQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDF
RFTTTLETKGNVENGILKGDLVARFGADPTLKRQDIRNMVTTLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
SAPPAAAIVDRNCFSVSLYSAQKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAIQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGH
ARFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN

Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S13 family [H]

Homologues:

Organism=Escherichia coli, GI1789573, Length=477, Percent_Identity=98.7421383647799, Blast_Score=978, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR000667 [H]

Pfam domain/function: PF02113 Peptidase_S13 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 51874; Mature: 51874

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSRFIIGLTSCIAFSAQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALP
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEHEEHHCCCCCEECCCCCCEECC
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGILKGDLVARFGADPTLKRQDIRNMV
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHH
TTLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS
HHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHEECCCCEEEEEEC
AQKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
PLPLAFAIQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHH
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLS
HHHHCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCC
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEHHCCCHHCCCCCEEECCCCC
LQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
CCHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCCEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MRFSRFIIGLTSCIAFSAQAANVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALP
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEHEEHHCCCCCEECCCCCCEECC
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGILKGDLVARFGADPTLKRQDIRNMV
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHH
TTLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS
HHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHEECCCCEEEEEEC
AQKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCC
PLPLAFAIQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHH
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLS
HHHHCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCC
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEHHCCCHHCCCCCEEECCCCC
LQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
CCHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCCEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2040429; 9278503; 2046551 [H]