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The map label for this gene is yafK [H]

Identifier: 218550430

GI number: 218550430

Start: 3212202

End: 3212942

Strand: Reverse

Name: yafK [H]

Synonym: EFER_3124

Alternate gene names: 218550430

Gene position: 3212942-3212202 (Counterclockwise)

Preceding gene: 218550444

Following gene: 218550426

Centisome position: 70.02

GC content: 47.1

Gene sequence:

>741_bases
GTGAAAATGTTTCGTAATGGATTGTTGTATATACTGTTGTTTGCAGTTGTTATCGCATTGGGTGTTCACTTTTTCTGGCC
TGTCCCGAACGAAAAAAGCGTTTTTCTGCCGCTCGAAAAACCCGTCTCACATTCTCCGGTTGTGCAACCTTCAAAGGTGA
TTCACCCCGGCGACCAGCTATTTATCCGCATTCTTAAAGCGGAAGATAAGCTGGAACTGTGGGCAAGCGCCAATAACAAG
CCTTACGAACTCTACAAAACCTGGACTATATGCGCGTGGTCTGGTGGCTTAGGGCCAAAGCACAAACAGGGGGATGGTAA
AAGCCCGGAAGGTTTTTATGCCACCAACAAAGGGTTACTTAACCCAAACAGCCGCTATCATCTGGCATTTAATATTGGTT
ACCCGAATGCTTACGATCGGGCAAACGGCTATACCGGTGATTTCATAATGGTTCACGGGAATTGTGTTTCGGCGGGCTGC
TATGCCATGACCGATGCTGGTATTGAAGAGATTTATCAACGGGTGGCTCAGGCGCTAAAGAGCGGGCAGAAGAGCGTGCC
GGTGCATATCTTCCCGTTTGCGATGAACGACGAAAATATGCGCCAGGCGCAGGCATGGCCGGAATATAATTTCTGGCTTA
TGTTGAAGCCCGGCTATGATTACTTCGAAAAAAATCGCCGATTGCCAATCATTTCTGTTGAAAACCGGCGTTATAAAATT
ACCCCAGTAACTCTTCCTTAA

Upstream 100 bases:

>100_bases
GTAAAACAGCAGGTACATCATTAGCCTGCAAACTATCAGCGACAGACGTAAAACGTCTCTCTATAATGGCGAAAAATAGC
CCACCTCTGGCGCAGGATGC

Downstream 100 bases:

>100_bases
CATCCATCGCCAGCTCAAACGAATGCAGGCGCGCCTGGTGATCGAAAATCTGCCCGTTAACCATAATCTCATCCGCGTCG
GTTTCGCGCAGGATCGACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKMFRNGLLYILLFAVVIALGVHFFWPVPNEKSVFLPLEKPVSHSPVVQPSKVIHPGDQLFIRILKAEDKLELWASANNK
PYELYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGC
YAMTDAGIEEIYQRVAQALKSGQKSVPVHIFPFAMNDENMRQAQAWPEYNFWLMLKPGYDYFEKNRRLPIISVENRRYKI
TPVTLP

Sequences:

>Translated_246_residues
MKMFRNGLLYILLFAVVIALGVHFFWPVPNEKSVFLPLEKPVSHSPVVQPSKVIHPGDQLFIRILKAEDKLELWASANNK
PYELYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGC
YAMTDAGIEEIYQRVAQALKSGQKSVPVHIFPFAMNDENMRQAQAWPEYNFWLMLKPGYDYFEKNRRLPIISVENRRYKI
TPVTLP
>Mature_246_residues
MKMFRNGLLYILLFAVVIALGVHFFWPVPNEKSVFLPLEKPVSHSPVVQPSKVIHPGDQLFIRILKAEDKLELWASANNK
PYELYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGC
YAMTDAGIEEIYQRVAQALKSGQKSVPVHIFPFAMNDENMRQAQAWPEYNFWLMLKPGYDYFEKNRRLPIISVENRRYKI
TPVTLP

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=199, Percent_Identity=50.7537688442211, Blast_Score=213, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28034; Mature: 28034

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMFRNGLLYILLFAVVIALGVHFFWPVPNEKSVFLPLEKPVSHSPVVQPSKVIHPGDQL
CCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCCCCCCEECCCHHH
FIRILKAEDKLELWASANNKPYELYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLL
EEEEECCCCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCC
NPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQRVAQALK
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCEECCCEEEHHHHHHHHHHHHHHHHHH
SGQKSVPVHIFPFAMNDENMRQAQAWPEYNFWLMLKPGYDYFEKNRRLPIISVENRRYKI
CCCCCCCEEEEEEEECCCCHHHHHCCCCCCEEEEECCCCHHHHCCCCCCEEEECCCEEEE
TPVTLP
EEEECC
>Mature Secondary Structure
MKMFRNGLLYILLFAVVIALGVHFFWPVPNEKSVFLPLEKPVSHSPVVQPSKVIHPGDQL
CCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCCCCCCEECCCHHH
FIRILKAEDKLELWASANNKPYELYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLL
EEEEECCCCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCC
NPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQRVAQALK
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCEECCCEEEHHHHHHHHHHHHHHHHHH
SGQKSVPVHIFPFAMNDENMRQAQAWPEYNFWLMLKPGYDYFEKNRRLPIISVENRRYKI
CCCCCCCEEEEEEEECCCCHHHHHCCCCCCEEEEECCCCHHHHCCCCCCEEEECCCEEEE
TPVTLP
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]