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The map label for this gene is hgdC [H]

Identifier: 218550360

GI number: 218550360

Start: 3125330

End: 3126103

Strand: Direct

Name: hgdC [H]

Synonym: EFER_3052

Alternate gene names: 218550360

Gene position: 3125330-3126103 (Clockwise)

Preceding gene: 218550359

Following gene: 218550361

Centisome position: 68.11

GC content: 54.01

Gene sequence:

>774_bases
GTGGTTGTGACGTATTCAATAGGGATTGATTCTGGTTCCACCGCCACCAAGGGGATCTTACTGGCAGACGGCGTGATTAT
GCGCCGTTTTCTCTGCCCGACACCGTTTCGCCCGGCCGCTGCGATTATTGAAGCATGGGATACACTGCGTGCCGGGCTGG
CGAGCACACCTTTTCTGACACTGACAGGTTATGGGCGGCAATTAGTTGATTTTGCAGATAAACAAGTGACAGAAATCTCT
TGTCACGGACTGGGGGCGCGTTTTCTTGCACCAAAGACGCGTGCAGTGATAGACATTGGCGGGCAGGACAGCAAAGTTAT
CCAACTGGATGACGAAGGCAACCTGAGCGACTTCCTGATGAACGACAAATGTGCGGCAGGCACCGGGCGTTTTTTGGAAG
TCATTTCTCGGACACTGGGCACCAGCGTCGAGCAACTCGACAGCATCACCAAAGACGTACAACCGCACGCGATCAGTAGC
ATGTGTACGGTATTTGCTGAATCTGAAGTGATCAGTTTACGTTCGGCTGGCGTGGCCCCCGAAAACATTCTCGCAGGCGT
GATCAATGCAATGGCGCGCCGCAGTGCAAATTTTATTGGTCGTCTTTCGTGTGAAGCGCCGTTGCTGTTCACTGGTGGTG
TCAGCCATTGCCACACCTTTGCCCACATGCTGGAAAGTCACCTGGCAATGCCTGTGCATACGCATCCCGACGCACAATTT
GCGGGTGCAATCGGTGCAGCCCTGGTAGGTCAACGGCAGAGAACACGCCGATGA

Upstream 100 bases:

>100_bases
GCACAACATTCCTTATATCGCCATTGAAACGGACTACTCCACTGCGGATATCGGGCAACTGAGCACACGTGTGGCTGCGT
TTATTGAAATGTTGTAAGAG

Downstream 100 bases:

>100_bases
GAGAGTGTTTGTTTCTGTTTCATTCAACACCAGGGGTGATTAAAACCCGCAAAGCATTACAGGCTGCGGGAGTCCCTTTT
CGTGTTGCCGATATTCCCCG

Product: ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MVVTYSIGIDSGSTATKGILLADGVIMRRFLCPTPFRPAAAIIEAWDTLRAGLASTPFLTLTGYGRQLVDFADKQVTEIS
CHGLGARFLAPKTRAVIDIGGQDSKVIQLDDEGNLSDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITKDVQPHAISS
MCTVFAESEVISLRSAGVAPENILAGVINAMARRSANFIGRLSCEAPLLFTGGVSHCHTFAHMLESHLAMPVHTHPDAQF
AGAIGAALVGQRQRTRR

Sequences:

>Translated_257_residues
MVVTYSIGIDSGSTATKGILLADGVIMRRFLCPTPFRPAAAIIEAWDTLRAGLASTPFLTLTGYGRQLVDFADKQVTEIS
CHGLGARFLAPKTRAVIDIGGQDSKVIQLDDEGNLSDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITKDVQPHAISS
MCTVFAESEVISLRSAGVAPENILAGVINAMARRSANFIGRLSCEAPLLFTGGVSHCHTFAHMLESHLAMPVHTHPDAQF
AGAIGAALVGQRQRTRR
>Mature_257_residues
MVVTYSIGIDSGSTATKGILLADGVIMRRFLCPTPFRPAAAIIEAWDTLRAGLASTPFLTLTGYGRQLVDFADKQVTEIS
CHGLGARFLAPKTRAVIDIGGQDSKVIQLDDEGNLSDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITKDVQPHAISS
MCTVFAESEVISLRSAGVAPENILAGVINAMARRSANFIGRLSCEAPLLFTGGVSHCHTFAHMLESHLAMPVHTHPDAQF
AGAIGAALVGQRQRTRR

Specific function: Unknown

COG id: COG1924

COG function: function code I; Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082426, Length=253, Percent_Identity=89.3280632411067, Blast_Score=465, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002731
- InterPro:   IPR008275 [H]

Pfam domain/function: PF01869 BcrAD_BadFG [H]

EC number: NA

Molecular weight: Translated: 27411; Mature: 27411

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVTYSIGIDSGSTATKGILLADGVIMRRFLCPTPFRPAAAIIEAWDTLRAGLASTPFLT
CEEEEEECCCCCCCHHCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
LTGYGRQLVDFADKQVTEISCHGLGARFLAPKTRAVIDIGGQDSKVIQLDDEGNLSDFLM
EECCCHHHHHHHHHHHHEEHHCCCCCHHCCCCCCEEEEECCCCCEEEEECCCCCHHHHHH
NDKCAAGTGRFLEVISRTLGTSVEQLDSITKDVQPHAISSMCTVFAESEVISLRSAGVAP
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
ENILAGVINAMARRSANFIGRLSCEAPLLFTGGVSHCHTFAHMLESHLAMPVHTHPDAQF
HHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHH
AGAIGAALVGQRQRTRR
HHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MVVTYSIGIDSGSTATKGILLADGVIMRRFLCPTPFRPAAAIIEAWDTLRAGLASTPFLT
CEEEEEECCCCCCCHHCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
LTGYGRQLVDFADKQVTEISCHGLGARFLAPKTRAVIDIGGQDSKVIQLDDEGNLSDFLM
EECCCHHHHHHHHHHHHEEHHCCCCCHHCCCCCCEEEEECCCCCEEEEECCCCCHHHHHH
NDKCAAGTGRFLEVISRTLGTSVEQLDSITKDVQPHAISSMCTVFAESEVISLRSAGVAP
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
ENILAGVINAMARRSANFIGRLSCEAPLLFTGGVSHCHTFAHMLESHLAMPVHTHPDAQF
HHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHH
AGAIGAALVGQRQRTRR
HHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]