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The map label for this gene is exbD [H]

Identifier: 218550254

GI number: 218550254

Start: 3012399

End: 3012824

Strand: Reverse

Name: exbD [H]

Synonym: EFER_2946

Alternate gene names: 218550254

Gene position: 3012824-3012399 (Counterclockwise)

Preceding gene: 218550255

Following gene: 218550252

Centisome position: 65.66

GC content: 47.65

Gene sequence:

>426_bases
ATGGCAATGCATTTTAATGAAAATCTCGACGATAACGGTGAAATGCATGATATCAACGTGACGCCGTTTATCGACGTTAT
GTTGGTTTTGCTGATTATCTTTATGGTGGCGGCACCGTTAGCGACGGTAGATGTGAAGGTGAACTTGCCTGCTTCTACCA
GCACGCCGCAGCCGCGCCCGGAAAAACCGGTTTATCTGTCGGTGAAGGCGGACAACTCGATGTTTATCGGTAACGATCCG
GTCACCGATGAAACAATGATTACGGCGTTGAATGCGTTAACCGAAGGCAAGAAAGACACCACCATCTTTTTCCGTGCGGA
TAAAACCGTCGATTACGAGATGTTGATGAAGGTAATGGACACACTGCATCAGGCGGGTTACCTGAAGATAGGTCTGGTTG
GCGAAGAAACTGCCAAAGCGAAATAA

Upstream 100 bases:

>100_bases
GCAAGTATTGTTGCTGCAAAGCCGTGACCTGGACCTGGAAGCCAGCGCCGCTGCGCATCCGGTACGTGTTGCACAGAAAT
TACGCGTAGGGTAATACGCC

Downstream 100 bases:

>100_bases
AAATGATGCCCGGTTGCTTTTCACAACCGGGCATTTTTTTAGCCTAAATGCTCTCCGCCGCACACGCCGTGCACTTCTGC
GGTGACATAGCTCGACTCCT

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAMHFNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDP
VTDETMITALNALTEGKKDTTIFFRADKTVDYEMLMKVMDTLHQAGYLKIGLVGEETAKAK

Sequences:

>Translated_141_residues
MAMHFNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDP
VTDETMITALNALTEGKKDTTIFFRADKTVDYEMLMKVMDTLHQAGYLKIGLVGEETAKAK
>Mature_140_residues
AMHFNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPV
TDETMITALNALTEGKKDTTIFFRADKTVDYEMLMKVMDTLHQAGYLKIGLVGEETAKAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=98.5815602836879, Blast_Score=281, Evalue=8e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15591; Mature: 15460

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMHFNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYEMLMKVMD
CCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
TLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
AMHFNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYEMLMKVMD
CCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
TLHQAGYLKIGLVGEETAKAK
HHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]