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The map label for this gene is yggR [H]

Identifier: 218550197

GI number: 218550197

Start: 2955536

End: 2956516

Strand: Reverse

Name: yggR [H]

Synonym: EFER_2889

Alternate gene names: 218550197

Gene position: 2956516-2955536 (Counterclockwise)

Preceding gene: 218550206

Following gene: 218550188

Centisome position: 64.43

GC content: 54.23

Gene sequence:

>981_bases
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTGGAAGAGCTATTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAACGGTCAGTTAGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCGTTACGGTTGTTACCTTCGTACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGATATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGAAGTGGAAAAT
CTACCACGCTGGCAGCGATGGTTGGTTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATTTCTATGCCAGCCAGCGGTGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
TGCCGCATTGCGGGAAGATCCCGATGTGATATTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGACATCTGGTGCTGGCGACCTTACATACACGCGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTGCTGATTAACACACCTGCGGTGGGGAATTTGATTCGAGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCTGCGG
GTGGGGGAAGGACGTTTGTAA

Upstream 100 bases:

>100_bases
TCTTCTGGAGAACGACCGCAACGCGTTGCAGCCGCTGAGATTTTGTCCCGGACCTGTGCCAGGTTATGCGCAATATCGTT
CATTTTCCGAGGATCTTAGT

Downstream 100 bases:

>100_bases
ATCGCCTTAATATCCCTGCTCGAAATAACTTTCGAGAATGATAACCGCAGAGGCAGAGTCAACTTTGCCTTTATTTAGCG
CCCGATAGCCGCCCTGTTCA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSYCPQLEQLGAPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YFYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQLR
VGEGRL

Sequences:

>Translated_326_residues
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSYCPQLEQLGAPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YFYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQLR
VGEGRL
>Mature_326_residues
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSYCPQLEQLGAPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YFYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQLR
VGEGRL

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=326, Percent_Identity=97.8527607361963, Blast_Score=648, Evalue=0.0,
Organism=Escherichia coli, GI1789723, Length=279, Percent_Identity=36.2007168458781, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1786296, Length=272, Percent_Identity=36.7647058823529, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 36002; Mature: 36002

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAIL
CCHHHEEEEEECCCCCCEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
LENGQLDFAVSLAENQRLRGSAFAQRQGISLALRLLPSYCPQLEQLGAPPILPELLKSEN
EECCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHCCCCCCCHHHHCCCC
GLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYFYASQRCLIQQREIGLHCM
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHH
TFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPH
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCH
VIQTGQQVGMITFQQSYQLRVGEGRL
HHHCCCCEEEEEEECCEEEEECCCCC
>Mature Secondary Structure
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAIL
CCHHHEEEEEECCCCCCEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
LENGQLDFAVSLAENQRLRGSAFAQRQGISLALRLLPSYCPQLEQLGAPPILPELLKSEN
EECCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHCCCCCCCHHHHCCCC
GLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYFYASQRCLIQQREIGLHCM
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHH
TFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHH
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPH
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCH
VIQTGQQVGMITFQQSYQLRVGEGRL
HHHCCCCEEEEEEECCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]