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The map label for this gene is ybaV [H]

Identifier: 218549890

GI number: 218549890

Start: 2641211

End: 2641654

Strand: Reverse

Name: ybaV [H]

Synonym: EFER_2575

Alternate gene names: 218549890

Gene position: 2641654-2641211 (Counterclockwise)

Preceding gene: 218549891

Following gene: 218549889

Centisome position: 57.57

GC content: 51.35

Gene sequence:

>444_bases
TTGCCATTTGTACGCTTTTCTTCTCCTCGTTATCGTGACTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGG
ATTAAAAGCCCTTCTTATCACTCTTTCACTGGCTTGTGCCGGAATGACTCATAGCGCCCTGGCCGCAGCTCCTGTAGCGA
AAGGTACGACAGTCGAAGCGAAAGCCGAAACTTCTGCCAGCGCTTCCACCAAAGCAACAGAGCCTGCTAAAGGTAGCGAT
GAAGAAGGTACCCGGGTCAGCATTAATAATGCCAGCGCGGAAGAGTTAGCCCGCGCGATGAATGGCGTTGGCCTGAAGAA
GGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACGGTGGAGGATCTCAAGCAGGTGCCGGGGATGG
GCAATTCGCTGGTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Upstream 100 bases:

>100_bases
ATGCGCTGGAACAGCAGTAATTACGAGTCGCCTCGCAAATAATTGCACCAACTCTGTAACAACCAAAGGCCGCTTTCGCG
GCCTTTTCCAAATCTGAAAA

Downstream 100 bases:

>100_bases
TTAATTTGCATAGTGGCAAATTTTTGCCAGACTGAAGAGGTCATACCAGTTATGACCTCTGCACTTATAACAGTTCTTAT
AACAACAACGTAAGGTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MPFVRFSSPRYRDSTVNKQGENSMKHGLKALLITLSLACAGMTHSALAAAPVAKGTTVEAKAETSASASTKATEPAKGSD
EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Sequences:

>Translated_147_residues
MPFVRFSSPRYRDSTVNKQGENSMKHGLKALLITLSLACAGMTHSALAAAPVAKGTTVEAKAETSASASTKATEPAKGSD
EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL
>Mature_146_residues
PFVRFSSPRYRDSTVNKQGENSMKHGLKALLITLSLACAGMTHSALAAAPVAKGTTVEAKAETSASASTKATEPAKGSDE
EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=124, Percent_Identity=88.7096774193548, Blast_Score=213, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15499; Mature: 15368

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFVRFSSPRYRDSTVNKQGENSMKHGLKALLITLSLACAGMTHSALAAAPVAKGTTVEA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEC
KAETSASASTKATEPAKGSDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
FKTVEDLKQVPGMGNSLVERNLAVLTL
CHHHHHHHHCCCCCCHHHHCCEEEEEC
>Mature Secondary Structure 
PFVRFSSPRYRDSTVNKQGENSMKHGLKALLITLSLACAGMTHSALAAAPVAKGTTVEA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEC
KAETSASASTKATEPAKGSDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
FKTVEDLKQVPGMGNSLVERNLAVLTL
CHHHHHHHHCCCCCCHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]