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The map label for this gene is ybgL

Identifier: 218549727

GI number: 218549727

Start: 2464469

End: 2465203

Strand: Reverse

Name: ybgL

Synonym: EFER_2404

Alternate gene names: 218549727

Gene position: 2465203-2464469 (Counterclockwise)

Preceding gene: 218549728

Following gene: 218549726

Centisome position: 53.72

GC content: 55.1

Gene sequence:

>735_bases
ATGAAAATTGATCTTAACGCAGACCTGGGTGAAGGCTGCGCCAGTGATGCAGAGCTTCTTACGCTGGTGTCATCTGCCAA
TATTGCCTGTGGATTTCACGCCGGAGATGCGCAAACCATGCAGGCAAGCGTGCGTGAAGCAGTGAAAAACGGTGTGGCTA
TCGGCGCGCATCCGGGTTTTCCTGATCGGGAAAATTTTGGCCGCACCGCGATGCAGCTGCCGCCGGAAACGGTTTATGCC
CAGACGCTATACCAGATAGGAGCGCTGGCAGCGATTACTCATGCTGAAGGGGGAGTGATGCGCCACGTCAAACCTCATGG
CATGTTGTACAACCAGGCAGCGAAAGAACCGCAACTGGCGGATGCCATTGCAAAAGCAGTCCACGCCTGTGATCCGGCAC
TTATTCTTGTCGGGCTGGCTGGAAGCGAACTGATCCGCGCCGGGAAACACTACGGTCTGACAACACGCCAGGAAGTATTT
GCCGACCGGGGATATCAGGCAGATGGTTCGCTGGTACCACGCAGTCAACCAGGTGCTTTAATTGAAGATGAAGAGCAATC
GCTTGCGCAGACGCTGGAGATGGTGCAAAACGGGAGGGTAAAAAGCATTACTGGTGAGTGGACTCCTGTCGAGGCACAAA
CGGTTTGTTTACATGGTGACGGGGAGCACGCTCTCGCTTTTGCCCGTCGCCTTCGCGCTGCGTTCCTGGAGCGTGGAATC
GCAGTACAAGCATAA

Upstream 100 bases:

>100_bases
GGACAGCCAATCCACTTTGTGCAGTGCTCGTTGGAGGAGGCGCTAAAAGCGCGTCACGATCAGCAGCGCTACTTCGAACA
ATTAGCATGGCGGTTACACA

Downstream 100 bases:

>100_bases
ATAAAAAAATGCTGCGTCATAAGGCGCAGCAAAATCACAACAACACACGTTACAAACAGGATGAGTTTATGGGAGAGGCT
ATATCTCTATGGCCACTGAC

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQASVREAVKNGVAIGAHPGFPDRENFGRTAMQLPPETVYA
QTLYQIGALAAITHAEGGVMRHVKPHGMLYNQAAKEPQLADAIAKAVHACDPALILVGLAGSELIRAGKHYGLTTRQEVF
ADRGYQADGSLVPRSQPGALIEDEEQSLAQTLEMVQNGRVKSITGEWTPVEAQTVCLHGDGEHALAFARRLRAAFLERGI
AVQA

Sequences:

>Translated_244_residues
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQASVREAVKNGVAIGAHPGFPDRENFGRTAMQLPPETVYA
QTLYQIGALAAITHAEGGVMRHVKPHGMLYNQAAKEPQLADAIAKAVHACDPALILVGLAGSELIRAGKHYGLTTRQEVF
ADRGYQADGSLVPRSQPGALIEDEEQSLAQTLEMVQNGRVKSITGEWTPVEAQTVCLHGDGEHALAFARRLRAAFLERGI
AVQA
>Mature_244_residues
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQASVREAVKNGVAIGAHPGFPDRENFGRTAMQLPPETVYA
QTLYQIGALAAITHAEGGVMRHVKPHGMLYNQAAKEPQLADAIAKAVHACDPALILVGLAGSELIRAGKHYGLTTRQEVF
ADRGYQADGSLVPRSQPGALIEDEEQSLAQTLEMVQNGRVKSITGEWTPVEAQTVCLHGDGEHALAFARRLRAAFLERGI
AVQA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=89.344262295082, Blast_Score=450, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBGL_ESCF3 (B7LKQ8)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002383518.1
- ProteinModelPortal:   B7LKQ8
- EnsemblBacteria:   EBESCT00000122607
- GeneID:   7121906
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_2404
- GeneTree:   EBGT00050000009266
- HOGENOM:   HBG482818
- ProtClustDB:   PRK05406
- BioCyc:   EFER585054:EFER_2404-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 25876; Mature: 25876

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQASVREAVKNGVAIGAHPGF
CEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCC
PDRENFGRTAMQLPPETVYAQTLYQIGALAAITHAEGGVMRHVKPHGMLYNQAAKEPQLA
CCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCHHH
DAIAKAVHACDPALILVGLAGSELIRAGKHYGLTTRQEVFADRGYQADGSLVPRSQPGAL
HHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
IEDEEQSLAQTLEMVQNGRVKSITGEWTPVEAQTVCLHGDGEHALAFARRLRAAFLERGI
CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC
AVQA
CCCC
>Mature Secondary Structure
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQASVREAVKNGVAIGAHPGF
CEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCC
PDRENFGRTAMQLPPETVYAQTLYQIGALAAITHAEGGVMRHVKPHGMLYNQAAKEPQLA
CCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCHHH
DAIAKAVHACDPALILVGLAGSELIRAGKHYGLTTRQEVFADRGYQADGSLVPRSQPGAL
HHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
IEDEEQSLAQTLEMVQNGRVKSITGEWTPVEAQTVCLHGDGEHALAFARRLRAAFLERGI
CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC
AVQA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA