Click here to switch to the map view.

The map label for this gene is ybhR

Identifier: 218549641

GI number: 218549641

Start: 2376100

End: 2377206

Strand: Direct

Name: ybhR

Synonym: EFER_2316

Alternate gene names: 218549641

Gene position: 2376100-2377206 (Clockwise)

Preceding gene: 218549640

Following gene: 218549643

Centisome position: 51.78

GC content: 51.94

Gene sequence:

>1107_bases
ATGTTTCATCGCTTATGGACGTTAATCCGCAAAGAGTTGCAGTCGTTGCTGCGTGAACCGCAAACCCGCGCGATTCTGAT
TTTACCCGTGCTGATTCAGGTGATTCTTTTCCCGTTCGCCGCCACACTGGAAGTGACCAACGCCACCATCGCCATCTACG
ATGAAGATAACGGCGAGCATTCGGTGGAGCTGACCCAGCGTTTTGCCCGTGCCAGCGCCTTTACCCATGTGTTGCTGCTG
AAAAGCCCGCAGGAGATCCGCCCAACCATCGACACGCAAAAGGCGTTATTGTTGGTACGTTTCCCGGCTGATTTCTCACG
CAAATTGGATACCTTCCAGACCGCGCCATTGCAGTTGATCCTCGACGGGCGCAACTCCAACAGTGCGCAAATTGCCGCCA
ACTACCTGCAACAGATCGTCAAAAATTATCAGCAGGAGCTGCTGGAAGGAAAACCGAAACCCAACAACAGCGAGCTGGTG
GTACGCAACTGGTATAACCCGAATCTCGACTACAAATGGTTTGTGGTGCCGTCGCTGATCGCCATGATCACCACTATCGG
CGTAATGATCGTCACGTCACTTTCCGTCGCCCGCGAACGTGAACAGGGTACGCTCGATCAGTTACTGGTTTCGCCCCTCA
CCACCTGGCAGATATTTATCGGCAAAGCCGTACCTGCGTTAATTGTCGCCACGTTTCAGGCAACCATTGTGCTGGCGATT
GGTATCTGGGCGTATCAAATCCCCTTCGCTGGATCGCTGGCGCTATTCTACTTTACGATGGTGATTTACGGTTTATCGCT
GGTGGGATTCGGTCTGTTGATTTCGTCACTCTGTTCAACGCAACAGCAGGCGTTTATCGGCGTGTTTGTCTTTATGATGC
CCGCCATTCTCCTTTCTGGTTACGTTTCGCCAGTGGAGAACATGCCAGTGTGGCTGCAAAACCTGACGTGGATTAACCCT
ATCCGCCACTTTACGGACATTACCAAGCAGATTTATTTGAAGGATGCGAGTCTGGATATTGTGTGGAATAGTTTGTGGCC
GCTACTGGTGATAACGGCCACGACAGGGTCAGCGGCGTACGCGATGTTTAGACGTAAGGTGATGTAA

Upstream 100 bases:

>100_bases
GTGCTGGTGGTGAACGTGCTGTTTTTGATCGCTTCGGCGGTGATGTTTATCGGTCTGACGTGGCTGAAAACCAAACGTCG
GCTGGATTAGGGAGAAGAGC

Downstream 100 bases:

>100_bases
CTTCTTATCTTTCGCCAGTAAAGACACTACTGCCGGGCCAGCAAGGATCGCCAGCCCTGCAATCGCCAGCAAAAAGTTGT
TTTCCAGTACGCGGGATAAC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLL
KSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV
VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINP
IRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM

Sequences:

>Translated_368_residues
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLL
KSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV
VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINP
IRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM
>Mature_368_residues
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLL
KSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV
VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINP
IRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain

Homologues:

Organism=Escherichia coli, GI1787010, Length=368, Percent_Identity=100, Blast_Score=746, Evalue=0.0,
Organism=Escherichia coli, GI1787011, Length=335, Percent_Identity=26.5671641791045, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI48994943, Length=354, Percent_Identity=22.5988700564972, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI226510979, Length=374, Percent_Identity=24.331550802139, Blast_Score=108, Evalue=4e-25,
Organism=Drosophila melanogaster, GI85725260, Length=382, Percent_Identity=22.2513089005236, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85725262, Length=382, Percent_Identity=22.2513089005236, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650853, Length=226, Percent_Identity=24.7787610619469, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650855, Length=226, Percent_Identity=24.7787610619469, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBHR_ECO57 (P0AFQ0)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   F90737
- RefSeq:   NP_286555.1
- RefSeq:   NP_308897.1
- ProteinModelPortal:   P0AFQ0
- EnsemblBacteria:   EBESCT00000028035
- EnsemblBacteria:   EBESCT00000057798
- GeneID:   917635
- GeneID:   958016
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1012
- KEGG:   ecs:ECs0870
- GeneTree:   EBGT00050000008883
- HOGENOM:   HBG471594
- OMA:   ENMPEWL
- ProtClustDB:   CLSK879768
- BioCyc:   ECOL83334:ECS0870-MONOMER
- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- PRINTS:   PR00164

Pfam domain/function: PF01061 ABC2_membrane

EC number: NA

Molecular weight: Translated: 41566; Mature: 41566

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2a7b6800)-; HASH(0x2abd7200)-; HASH(0x2a7b64f4)-; HASH(0x2a7bc220)-; HASH(0x2a568340)-; HASH(0x2a13162c)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEH
CHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHEEEECEEEEEEECCCCCH
SVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLI
HHHHHHHHHHHHHHHHHEEECCCHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
LDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHH
AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSG
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAY
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCEEEEEECCCHHHH
AMFRRKVM
HHHHHHCH
>Mature Secondary Structure
MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYDEDNGEH
CHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHEEEECEEEEEEECCCCCH
SVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFPADFSRKLDTFQTAPLQLI
HHHHHHHHHHHHHHHHHEEECCCHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
LDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHH
AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSG
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWNSLWPLLVITATTGSAAY
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCEEEEEECCCHHHH
AMFRRKVM
HHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796