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The map label for this gene is ccmD [H]

Identifier: 218549613

GI number: 218549613

Start: 2347620

End: 2347829

Strand: Reverse

Name: ccmD [H]

Synonym: EFER_2288

Alternate gene names: 218549613

Gene position: 2347829-2347620 (Counterclockwise)

Preceding gene: 218549614

Following gene: 218549612

Centisome position: 51.17

GC content: 57.62

Gene sequence:

>210_bases
ATGACCCCTGCATTTGCTTCCTGGAATGAATTTTTCGCAATGGGCGGTTACGCCTTTTTTGTCTGGCTGGCGGTGGTGAT
GACCGTTATTCCGCTGGTGGTTTTGGTCGTGCACTCCGTGTTGCAGCATCGCGCAATTCTGCGTGGCGTGGCGCAACAGC
GGGCGCGTGAGGCGCGTTTACGTGCTGCGCAACAGCAGGAGGCTGCATGA

Upstream 100 bases:

>100_bases
TGTCTGCCACGCTGACGCTGATGCGGATGCGTAATTTAATTTTGCTGATGGAAAAACGCCGTCCGTGGGTGAGTGAACTG
ATACTGAAAAGAGGCCGTAA

Downstream 100 bases:

>100_bases
ATATTCGCCGTAAAAACCGCTTGTGGATTGCCTGTGCCGTGCTGGCGGGGCTGGCGCTGACTATCGGCCTGGTGTTGTAT
GCGCTGCGCTCGAATATCGA

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVLQHRAILRGVAQQRAREARLRAAQQQEAA

Sequences:

>Translated_69_residues
MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVLQHRAILRGVAQQRAREARLRAAQQQEAA
>Mature_68_residues
TPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVLQHRAILRGVAQQRAREARLRAAQQQEAA

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=69, Percent_Identity=98.5507246376812, Blast_Score=135, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 7727; Mature: 7596

Theoretical pI: Translated: 11.81; Mature: 11.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVLQHRAILRGVAQQRAREARL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAQQQEAA
HHHHHHCCC
>Mature Secondary Structure 
TPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVLQHRAILRGVAQQRAREARL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAQQQEAA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]