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The map label for this gene is yohD [H]

Identifier: 218549551

GI number: 218549551

Start: 2280365

End: 2280943

Strand: Direct

Name: yohD [H]

Synonym: EFER_2223

Alternate gene names: 218549551

Gene position: 2280365-2280943 (Clockwise)

Preceding gene: 218549548

Following gene: 218549554

Centisome position: 49.7

GC content: 53.71

Gene sequence:

>579_bases
ATGGATCTCAATACACTCATCTCACAATATGGTTATGCTGCGCTGGTGCTCGGCAGTCTGGCGGAAGGTGAAACCGTGAC
GTTGCTGGGAGGCGTTGCGGCACATCAGGGGTTATTAAAGTTCCCGCTGGTGGTACTTTCTGTGGCGCTTGGCGGCATGA
TTGGCGACCAGGTGCTTTATCTGTGCGGGCGGCGGTTTGGTGGCAAGCTGTTACGCCGTTTCTCTAAGCATCAGGATAAA
ATTGAGCGGGCGCAGAAACTTATCCAACGCCATCCGTATCTGTTTGTCATTGGTACGCGTTTTATGTATGGCTTTCGGGT
CATTGGCCCGACGCTGATTGGTGCCAGCCAGCTGCCGCCGAAAATCTTTCTGCCGCTGAATATTCTCGGCGCATTTGCCT
GGGCGTTGATTTTTACCACTATCGGTTATGCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTG
AAGCACTGGGTCTGGTTGATCCTGGTCGTGGTTCTGGTGGTTGGCGTGCGCTGGTGGCTGAAACGGCGCGGTAAGAAAAA
GCCGGATGATAAGGCGTAA

Upstream 100 bases:

>100_bases
TCGCTTATGTAATTTGTACCGTCTGATGTACGTCCTTTTTCAGCGTGAATAATTCACAGGGTGTATGCTTACAGGCAACC
AAAGGGAGACAGACGGGCCT

Downstream 100 bases:

>100_bases
AACCATTGCCGCGGATAAGACGGTCTGCGCCGCATCCGACATCAGGTACATCATGCCTGATGCGACGCTTCCGCGTCTTA
TCATGCCTACCAAATATTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MDLNTLISQYGYAALVLGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDK
IERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
KHWVWLILVVVLVVGVRWWLKRRGKKKPDDKA

Sequences:

>Translated_192_residues
MDLNTLISQYGYAALVLGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDK
IERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
KHWVWLILVVVLVVGVRWWLKRRGKKKPDDKA
>Mature_192_residues
MDLNTLISQYGYAALVLGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDK
IERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
KHWVWLILVVVLVVGVRWWLKRRGKKKPDDKA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=192, Percent_Identity=98.4375, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 21423; Mature: 21423

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNTLISQYGYAALVLGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
EEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRGKKKPDDKA
HHCCCCCCCCCC
>Mature Secondary Structure
MDLNTLISQYGYAALVLGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLY
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
KIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWL
EEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRRGKKKPDDKA
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]