| Definition | Escherichia fergusonii ATCC 35469 chromosome, complete genome. |
|---|---|
| Accession | NC_011740 |
| Length | 4,588,711 |
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The map label for this gene is 218549456
Identifier: 218549456
GI number: 218549456
Start: 2153080
End: 2154369
Strand: Reverse
Name: 218549456
Synonym: EFER_2125
Alternate gene names: NA
Gene position: 2154369-2153080 (Counterclockwise)
Preceding gene: 218549457
Following gene: 218549455
Centisome position: 46.95
GC content: 32.48
Gene sequence:
>1290_bases ATGCTGAAGACTCTTATAAAAAAAACAAAACTCAACTTTGAAATACAAAAAATAATTTTAAATGCTGGATGGTTGTTATT TGATAAGTTTATTCGATTAATGTTCGGCTTGTTAGTTGGTGTCTGGATTGCACGCTATCTAGGGCCTGGGACATATGGTC AGCTAGCTTATATTGTTACTCTTGTAAGTTTATTTCAAGTTGTTGTATCTCTCGGAATGGATACAATTTTAGTGCGTGAG ATTACGTGCAATAAAAATGAAGCTGCCCAAATTTTAGGAAGCGCTATATTTATGCGTTTCATTGTTGGTTGTATAAGCAT AGTATTACTTATTGGTGGTGTAACTATATTCAATGGTGCATATTTTGGAGTATTAACATTATTGGCAAGTGGCGGATTAT TATTACAATGCACAGATACTATAGATATTTGGTTTCAAAGTCAGAGCCAAAGTAAAAGAACTGTTATAGCAAAGCTATGC TCTTACACAATTACGAATATATTACGGATTATCCTCATAATATATAATGCACCATTATGGACTTTTGCTCTTTTGCTAAG TATTGATGCATCATTATCTGCTCTAGCTTTGACGTTTGCTTATAAAACATTTAAAACAGCGCATAGATGGCACGTAAGTT TATTACGATGCAAGGCGCTACTGTCAGAGTCATGGCCTTTTTTAATAAGCGGAATATCTATCATATTATACATGAGGATC GATCAAGTTTTGATAAAAAATATAATGGGAGAAAAACCGCTAGGTATTTATTCAGCTGCAATACAATTTTCTACATTATG GAATTTTATCCCATTGACTTTATCGGTAAGTTTAGCTCCTTATGTGGCAAGGAAAAAAAAAGAAAGTGAACAGATATATT ATCAAACTCTGTGTAATATATTTTTAATATTTTCAATTATCGGATGGTGTATAACATTAACTATTATTACTTTATCGCCA TTCATAATAGAATTTATGTTAGGTGCCAATTATAAAGATGGCGTTGGCGTTCTTTCTATCCATGTTATAACCAATTTATT CATATGTTTAGGAATTTCACAGAGTCTCTGGATTGTTAATGAGAGAAAGGGTACTTTCATCCTTTACAAGTCAATTACAG GGCTTGTTGTCAGTGTTATAGCAAATATCATTCTTATTCCGCTATATGGCATCAAAGGCGCAGCGATAGCGTCAGTTCTC TCACAAATTACAGCTTCTACAATTTTTAATCTGTGTTTTGCGAAGAAGATTTTTTTTATGCAATTGAAAAGTTTGTTTTT CCTTAGATAA
Upstream 100 bases:
>100_bases GTAAAGCCAGGGGCGGTAGCGTGTCTGGTTAAAGCTAATACTACAAATTTATTATACAAGCAATATAGGCCATATTTTAC TTATATCTATCAGGTGCTTA
Downstream 100 bases:
>100_bases ATGGAACAAAAAGTGAATAATATTTCCCCTGTAGTTGTTTTTGTCTATTCACGCCCTGAGCATACAAAAAAAATGCTGTC AGCATTAAGTAAGAATAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: LPS Biosynthesis Related Polysaccharide Transporter; Heteropolysaccharide Repeat-Containing Protein; MatE Family; O-Antigen Flippase; Lipopolysaccharide O-Side Chain Biosynthesis Protein; Polysaccharide Biosynthesis Export Protein; Methyltransferase FkbM Family; Lipopolysaccharide/O-Antigen Transporter
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MLKTLIKKTKLNFEIQKIILNAGWLLFDKFIRLMFGLLVGVWIARYLGPGTYGQLAYIVTLVSLFQVVVSLGMDTILVRE ITCNKNEAAQILGSAIFMRFIVGCISIVLLIGGVTIFNGAYFGVLTLLASGGLLLQCTDTIDIWFQSQSQSKRTVIAKLC SYTITNILRIILIIYNAPLWTFALLLSIDASLSALALTFAYKTFKTAHRWHVSLLRCKALLSESWPFLISGISIILYMRI DQVLIKNIMGEKPLGIYSAAIQFSTLWNFIPLTLSVSLAPYVARKKKESEQIYYQTLCNIFLIFSIIGWCITLTIITLSP FIIEFMLGANYKDGVGVLSIHVITNLFICLGISQSLWIVNERKGTFILYKSITGLVVSVIANIILIPLYGIKGAAIASVL SQITASTIFNLCFAKKIFFMQLKSLFFLR
Sequences:
>Translated_429_residues MLKTLIKKTKLNFEIQKIILNAGWLLFDKFIRLMFGLLVGVWIARYLGPGTYGQLAYIVTLVSLFQVVVSLGMDTILVRE ITCNKNEAAQILGSAIFMRFIVGCISIVLLIGGVTIFNGAYFGVLTLLASGGLLLQCTDTIDIWFQSQSQSKRTVIAKLC SYTITNILRIILIIYNAPLWTFALLLSIDASLSALALTFAYKTFKTAHRWHVSLLRCKALLSESWPFLISGISIILYMRI DQVLIKNIMGEKPLGIYSAAIQFSTLWNFIPLTLSVSLAPYVARKKKESEQIYYQTLCNIFLIFSIIGWCITLTIITLSP FIIEFMLGANYKDGVGVLSIHVITNLFICLGISQSLWIVNERKGTFILYKSITGLVVSVIANIILIPLYGIKGAAIASVL SQITASTIFNLCFAKKIFFMQLKSLFFLR >Mature_429_residues MLKTLIKKTKLNFEIQKIILNAGWLLFDKFIRLMFGLLVGVWIARYLGPGTYGQLAYIVTLVSLFQVVVSLGMDTILVRE ITCNKNEAAQILGSAIFMRFIVGCISIVLLIGGVTIFNGAYFGVLTLLASGGLLLQCTDTIDIWFQSQSQSKRTVIAKLC SYTITNILRIILIIYNAPLWTFALLLSIDASLSALALTFAYKTFKTAHRWHVSLLRCKALLSESWPFLISGISIILYMRI DQVLIKNIMGEKPLGIYSAAIQFSTLWNFIPLTLSVSLAPYVARKKKESEQIYYQTLCNIFLIFSIIGWCITLTIITLSP FIIEFMLGANYKDGVGVLSIHVITNLFICLGISQSLWIVNERKGTFILYKSITGLVVSVIANIILIPLYGIKGAAIASVL SQITASTIFNLCFAKKIFFMQLKSLFFLR
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47953; Mature: 47953
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTLIKKTKLNFEIQKIILNAGWLLFDKFIRLMFGLLVGVWIARYLGPGTYGQLAYIVT CCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LVSLFQVVVSLGMDTILVREITCNKNEAAQILGSAIFMRFIVGCISIVLLIGGVTIFNGA HHHHHHHHHHCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCH YFGVLTLLASGGLLLQCTDTIDIWFQSQSQSKRTVIAKLCSYTITNILRIILIIYNAPLW HHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH TFALLLSIDASLSALALTFAYKTFKTAHRWHVSLLRCKALLSESWPFLISGISIILYMRI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DQVLIKNIMGEKPLGIYSAAIQFSTLWNFIPLTLSVSLAPYVARKKKESEQIYYQTLCNI HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLIFSIIGWCITLTIITLSPFIIEFMLGANYKDGVGVLSIHVITNLFICLGISQSLWIVN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE ERKGTFILYKSITGLVVSVIANIILIPLYGIKGAAIASVLSQITASTIFNLCFAKKIFFM CCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLKSLFFLR HHHHHHHCC >Mature Secondary Structure MLKTLIKKTKLNFEIQKIILNAGWLLFDKFIRLMFGLLVGVWIARYLGPGTYGQLAYIVT CCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LVSLFQVVVSLGMDTILVREITCNKNEAAQILGSAIFMRFIVGCISIVLLIGGVTIFNGA HHHHHHHHHHCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCH YFGVLTLLASGGLLLQCTDTIDIWFQSQSQSKRTVIAKLCSYTITNILRIILIIYNAPLW HHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH TFALLLSIDASLSALALTFAYKTFKTAHRWHVSLLRCKALLSESWPFLISGISIILYMRI HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DQVLIKNIMGEKPLGIYSAAIQFSTLWNFIPLTLSVSLAPYVARKKKESEQIYYQTLCNI HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLIFSIIGWCITLTIITLSPFIIEFMLGANYKDGVGVLSIHVITNLFICLGISQSLWIVN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE ERKGTFILYKSITGLVVSVIANIILIPLYGIKGAAIASVLSQITASTIFNLCFAKKIFFM CCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLKSLFFLR HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA