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The map label for this gene is ydaM [H]

Identifier: 218548982

GI number: 218548982

Start: 1676942

End: 1678180

Strand: Direct

Name: ydaM [H]

Synonym: EFER_1630

Alternate gene names: 218548982

Gene position: 1676942-1678180 (Clockwise)

Preceding gene: 218548977

Following gene: 218548989

Centisome position: 36.54

GC content: 46.89

Gene sequence:

>1239_bases
TTGCCAATGATTACACACAACTTCACTCCCCTGGATTTATTATCCATTCCAGTCTGGATTGTCTCGCCCGCTACGGAAGA
ATTATTGTTTGCAAACGCCGTAGCACGGAAGCTTTCCCAGAATCAATCTTTCAACCAGATGCGAAACAACATTTATTCCG
TCGGCGCACAACAAACACTGACGCAATATCTTACTGATCTCTATCATCGCCATGACATTGTGGAACTACTGACGGTCTGG
CGTGATGGGGAAAAAATACCCCTTTCCTGTCGTTTGTCATTAAATCACCTGGCTGATATTGGCGAAGTTATTGTTTTCGA
AGGTATGGAGTTGCCTGCGACCCAGGGTCTGAAAGCCAGTCGCTCAGCGAATTACCAACGTAAAAAACAGGGTTTCTATG
CTCGCTTTTTTCAAACCAACTCAGCGCCAATGTTACTGATTGATCCCGCTCGTGATGGACTAATCGTCGATGCAAATCTG
GCTGCCCTCAATTTTTATGGTTATGACCATGAGAATATGTGCCAGCGACATACATGGGAAATCAATATGTTAGGCCGTGA
CGTATTACCAGTGATGCAAGAGATAGCCCGTCTACCTGGCGGACATAAGCCGCTTAATTTTGTGCATAAGCTTGCAGATG
GTTCCACTCGTCATGTGCAAACATACGCAGGACCGATTGAGATATATGGCGACAAACTTATGCTCTGCATTATTCATGAC
ATCACTGAACAAAAGCGGCTGGAGCAGGAGTTGGAACAAGCTGCCATGCGTGATGCCTTAACCGGGCTGCTTAATCGTCG
GCAATTTTTTCTGCTCACTGAGCATAATTCTTCGCAGCCGGGATTAATGAGTCAGGATTACAGCTTGTTGTTGATCGATA
CAGATCGTTTTAAAAGTGTGAATGATCTCTACGGCCACCAGAAAGGAGATGATGTGCTGTGCGTGTTAGCACGTACGCTG
GAAAGTTGTGCCCGTAAGGGCGATCTGGTTTTTCGCTGGGGAGGTGAAGAGTTTGTTTTATTACTGCCACGCACTACCCT
CGATGACGCTCTGGCGCTGGCCGAAACAATCCGCGCTCAGGTGGCGAAAATTACCCTCACGGGTTTGCCACGATTCACGG
TAAGTATTGGTGTAGCGCGTCACGAAATCGATGAAACAATCGATGCCTTGTTTAAGCGGGTTGATGATGCGTTGTATCGG
GCAAAAAATGATGGTCGTAATCGGGTGTTAGCAGCCTGA

Upstream 100 bases:

>100_bases
CCTGACAAAGAATTAACGTCTACTATTATCGGGATAGCCATTTCATACATTACTACTATTTCCCTTTTTCAAAACAATAA
TTGTTCATAAAAATAACGAG

Downstream 100 bases:

>100_bases
AGTTTGCGCCAGGTGCTGATTACTGGCACCCTGGCGCGATAAAGTCATGCTTATTCGGCAGCCTCACGCTCAGCGAAAAT
TTGCTGAGCGAGATGCATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MPMITHNFTPLDLLSIPVWIVSPATEELLFANAVARKLSQNQSFNQMRNNIYSVGAQQTLTQYLTDLYHRHDIVELLTVW
RDGEKIPLSCRLSLNHLADIGEVIVFEGMELPATQGLKASRSANYQRKKQGFYARFFQTNSAPMLLIDPARDGLIVDANL
AALNFYGYDHENMCQRHTWEINMLGRDVLPVMQEIARLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIIHD
ITEQKRLEQELEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGDDVLCVLARTL
ESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQVAKITLTGLPRFTVSIGVARHEIDETIDALFKRVDDALYR
AKNDGRNRVLAA

Sequences:

>Translated_412_residues
MPMITHNFTPLDLLSIPVWIVSPATEELLFANAVARKLSQNQSFNQMRNNIYSVGAQQTLTQYLTDLYHRHDIVELLTVW
RDGEKIPLSCRLSLNHLADIGEVIVFEGMELPATQGLKASRSANYQRKKQGFYARFFQTNSAPMLLIDPARDGLIVDANL
AALNFYGYDHENMCQRHTWEINMLGRDVLPVMQEIARLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIIHD
ITEQKRLEQELEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGDDVLCVLARTL
ESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQVAKITLTGLPRFTVSIGVARHEIDETIDALFKRVDDALYR
AKNDGRNRVLAA
>Mature_411_residues
PMITHNFTPLDLLSIPVWIVSPATEELLFANAVARKLSQNQSFNQMRNNIYSVGAQQTLTQYLTDLYHRHDIVELLTVWR
DGEKIPLSCRLSLNHLADIGEVIVFEGMELPATQGLKASRSANYQRKKQGFYARFFQTNSAPMLLIDPARDGLIVDANLA
ALNFYGYDHENMCQRHTWEINMLGRDVLPVMQEIARLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIIHDI
TEQKRLEQELEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGDDVLCVLARTLE
SCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQVAKITLTGLPRFTVSIGVARHEIDETIDALFKRVDDALYRA
KNDGRNRVLAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=410, Percent_Identity=75.1219512195122, Blast_Score=651, Evalue=0.0,
Organism=Escherichia coli, GI145693134, Length=187, Percent_Identity=33.6898395721925, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=31.4285714285714, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=36.9047619047619, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=36.2068965517241, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788381, Length=188, Percent_Identity=35.6382978723404, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=34.2245989304813, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=37.3417721518987, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=31.8681318681319, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787541, Length=197, Percent_Identity=30.9644670050761, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=32.7160493827161, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=31.5151515151515, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46648; Mature: 46517

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMITHNFTPLDLLSIPVWIVSPATEELLFANAVARKLSQNQSFNQMRNNIYSVGAQQTL
CCCCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
TQYLTDLYHRHDIVELLTVWRDGEKIPLSCRLSLNHLADIGEVIVFEGMELPATQGLKAS
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCEEEECCCCCCCCCCCCCH
RSANYQRKKQGFYARFFQTNSAPMLLIDPARDGLIVDANLAALNFYGYDHENMCQRHTWE
HCCCHHHHHCCCEEEEEECCCCCEEEECCCCCCEEEECCEEEEEEECCCCHHHHHHCCEE
INMLGRDVLPVMQEIARLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIIHD
EEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCEEEECCEEEEEEHHH
ITEQKRLEQELEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSV
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEECHHCCCH
NDLYGHQKGDDVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQ
HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHH
VAKITLTGLPRFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLAA
HHEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PMITHNFTPLDLLSIPVWIVSPATEELLFANAVARKLSQNQSFNQMRNNIYSVGAQQTL
CCCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
TQYLTDLYHRHDIVELLTVWRDGEKIPLSCRLSLNHLADIGEVIVFEGMELPATQGLKAS
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCEEEECCCCCCCCCCCCCH
RSANYQRKKQGFYARFFQTNSAPMLLIDPARDGLIVDANLAALNFYGYDHENMCQRHTWE
HCCCHHHHHCCCEEEEEECCCCCEEEECCCCCCEEEECCEEEEEEECCCCHHHHHHCCEE
INMLGRDVLPVMQEIARLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIIHD
EEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCEEEECCEEEEEEHHH
ITEQKRLEQELEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSV
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEECHHCCCH
NDLYGHQKGDDVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQ
HHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHH
VAKITLTGLPRFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLAA
HHEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]