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The map label for this gene is ydhO [H]

Identifier: 218548750

GI number: 218548750

Start: 1426604

End: 1427443

Strand: Reverse

Name: ydhO [H]

Synonym: EFER_1389

Alternate gene names: 218548750

Gene position: 1427443-1426604 (Counterclockwise)

Preceding gene: 218548752

Following gene: 218548749

Centisome position: 31.11

GC content: 48.1

Gene sequence:

>840_bases
GTGGCGCGGATAAACCGAATCTCGATCACGCTCTGTGCTTTGCTGTTTACTACACTCCCTTTCACGCCAATGGCCCATGC
TTCCAAGCAAGCCAGGGCAACGTCTGCCACAACGCATGTAACACAAAAGGCAGAGAAAAAGAAAAGCACGACCACAACGA
AAAAAACAGCGAAAGCCAGTAAGAACACCAATAAAAAAGCCGTCAGCAAAAATAAAACTAGCAGTAAAACCGCCTCATCG
TCTAAAAAACGTCTTAACACATCACCCGCTAAAGTCAGCAAAACAGCCAGCCACAAGGCTAAAGCAACCACCAAAAAGGT
AACGACTGTCGCCTGGACCGAGAAATGCACACCACGTAAAGGGCGTAAACCAGTCTGTGTAAAAGTGCGTAATGCCGCGC
CAGGCACCATTGCTGATGCCCATAAAGCCAGAGTGCAAAAAGCCACTAAAACGGCAATGAACAAACTAATGCAGCAAATT
GGCAAACCGTATCGTTGGGGAGGCACGTCTCCACGCACAGGATTTGATTGCAGTGGTCTGGTTTATTACGCCTACAAAGA
TCTGGTTAAATTCCGCATTCCTCGTACTGCTAATGAGATGTATCACCTGCGTGATGCGGCGCCCATTGAACGCAGTGAAT
TGAAAAATGGTGATCTGGTGTTCTTTCGTACCCAAGGTCGTGGTACTGCAGATCATGTAGGGGTTTATGTGGGTAACGGA
AAATTCATCCAGTCGCCGCGTAGTGGTCAGGAAATCAAAATCACCTCTTTGAGTGAAGATTACTGGCAACGCCATTATGT
CGGCGCTCGCCGGGTGATGACCCCACAAACCATCCGCTAA

Upstream 100 bases:

>100_bases
ATTAAAGCTATTAACTTTTTTACTTTCTTTAGTTTAGAATCATCGAGTTTTGTAAATCACCCGCAGGCATGATGGACCTG
CCTTTACAGAGGATTGCTCA

Downstream 100 bases:

>100_bases
AAATTTACCCTGTTGTGAACGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTATTTTGTTACCCTATCCTCACGCAC
AATAAGGCTATTGTGCGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MARINRISITLCALLFTTLPFTPMAHASKQARATSATTHVTQKAEKKKSTTTTKKTAKASKNTNKKAVSKNKTSSKTASS
SKKRLNTSPAKVSKTASHKAKATTKKVTTVAWTEKCTPRKGRKPVCVKVRNAAPGTIADAHKARVQKATKTAMNKLMQQI
GKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNG
KFIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPQTIR

Sequences:

>Translated_279_residues
MARINRISITLCALLFTTLPFTPMAHASKQARATSATTHVTQKAEKKKSTTTTKKTAKASKNTNKKAVSKNKTSSKTASS
SKKRLNTSPAKVSKTASHKAKATTKKVTTVAWTEKCTPRKGRKPVCVKVRNAAPGTIADAHKARVQKATKTAMNKLMQQI
GKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNG
KFIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPQTIR
>Mature_278_residues
ARINRISITLCALLFTTLPFTPMAHASKQARATSATTHVTQKAEKKKSTTTTKKTAKASKNTNKKAVSKNKTSSKTASSS
KKRLNTSPAKVSKTASHKAKATTKKVTTVAWTEKCTPRKGRKPVCVKVRNAAPGTIADAHKARVQKATKTAMNKLMQQIG
KPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGK
FIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPQTIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=279, Percent_Identity=78.8530465949821, Blast_Score=425, Evalue=1e-120,
Organism=Escherichia coli, GI1786421, Length=134, Percent_Identity=52.9850746268657, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1788501, Length=122, Percent_Identity=36.8852459016393, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=36.1344537815126, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30907; Mature: 30776

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARINRISITLCALLFTTLPFTPMAHASKQARATSATTHVTQKAEKKKSTTTTKKTAKAS
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNTNKKAVSKNKTSSKTASSSKKRLNTSPAKVSKTASHKAKATTKKVTTVAWTEKCTPRK
CCCCHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
GRKPVCVKVRNAAPGTIADAHKARVQKATKTAMNKLMQQIGKPYRWGGTSPRTGFDCSGL
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCH
VYYAYKDLVKFRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNG
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEEEECCC
KFIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPQTIR
EEEECCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC
>Mature Secondary Structure 
ARINRISITLCALLFTTLPFTPMAHASKQARATSATTHVTQKAEKKKSTTTTKKTAKAS
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNTNKKAVSKNKTSSKTASSSKKRLNTSPAKVSKTASHKAKATTKKVTTVAWTEKCTPRK
CCCCHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
GRKPVCVKVRNAAPGTIADAHKARVQKATKTAMNKLMQQIGKPYRWGGTSPRTGFDCSGL
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCH
VYYAYKDLVKFRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNG
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEEEECCC
KFIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPQTIR
EEEECCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]