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The map label for this gene is ydjQ [H]

Identifier: 218548690

GI number: 218548690

Start: 1363099

End: 1363986

Strand: Reverse

Name: ydjQ [H]

Synonym: EFER_1326

Alternate gene names: 218548690

Gene position: 1363986-1363099 (Counterclockwise)

Preceding gene: 218548691

Following gene: 218548682

Centisome position: 29.72

GC content: 48.76

Gene sequence:

>888_bases
GTGGTACGGCGTTTAACTTCATCGCGGCTCGAATTTGAAGCAGCGGCAATTTATGAATATCCCGAACATTTACGTTCTTT
TCTCAGCGAATTACCCACCCGCCCTGGCGTGTATTTGTTTCATGGCAAAAGTGACACCATGCCGCTCTATATTGGCAAAA
GCGTCAATATCCGCAGTCGCGTGCTTTCCCATTTACGCACCCCGGATGAAGCCGCCATGCTGCGGCAATCCCGGCGTATT
AGCTGGATATGTACCGCAGGCGAAATCGGTGCTTTGTTGTTGGAAGCAAGGCTAATCAAAGAGCAACAACCGTTATTTAA
TAAACGTCTGCGTCGCAATCGCCAACTCTGTTCTCTGAAACTGGATAATCAGCGAACAGAAGTGGTGTATGCCAAAGAAG
TGGATTTTTCGCGAGCACCAAACTTGTTCGGCCTGTTTGCCAATCGCCGCTCGGCATTACAGGCATTACAGACAATCGCT
GATGAACAAAAACTCTGTTATGGCCTGTTAGGACTGGAGCCATTAAGCCGTGGTCGTGCCTGTTTTCGTTCGGCGCTTAA
ACGTTGTGCGGGGGCATGCTGCGGTAAAGAAAGTCAGGAAACGCATGAGCTACGTCTGCAACAATCTCTGGAACGATTAC
GTGTTGTTTGCTGGCCATGGCAAGGAGCGATAGCACTGAAAGAGCAGCATCCTGAAATGACTCAGTTCCACATTATCCAT
AACTGGTTATGGCTGGGGGCGGTGAATAGCCTGGATGAGGCGACAACATTAGTACGCACGCCAGCCGGGTTTGATCATGA
TGGCTATAAAATTCTCTGCAAACCGCTGCTTTCCGGTAACTATGACATTATTGAACTTGATCCGGTGAATAACCAGGAAG
CCAGTTAA

Upstream 100 bases:

>100_bases
TGGCACATCAGGCAATTTTACGGTTACCATCGGCCCTGCCTCTTTTTTAATCGCTTCCCGCTTGTTACACTGGATAGATA
ACCAGCATTCGGAGTCAACA

Downstream 100 bases:

>100_bases
TTTCACTAAACAGTAATTTCCCTGTCGATTGCAGGAGTCGCAAAGTATGTTTACCATCGTACCAGCACGCTCCCTGGTCG
GTGGTTAACACCTTATCGCC

Product: nucleotide excision repair endonuclease

Products: NA

Alternate protein names: Endonuclease cho; UvrC homolog protein [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MVRRLTSSRLEFEAAAIYEYPEHLRSFLSELPTRPGVYLFHGKSDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRI
SWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQRTEVVYAKEVDFSRAPNLFGLFANRRSALQALQTIA
DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQETHELRLQQSLERLRVVCWPWQGAIALKEQHPEMTQFHIIH
NWLWLGAVNSLDEATTLVRTPAGFDHDGYKILCKPLLSGNYDIIELDPVNNQEAS

Sequences:

>Translated_295_residues
MVRRLTSSRLEFEAAAIYEYPEHLRSFLSELPTRPGVYLFHGKSDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRI
SWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQRTEVVYAKEVDFSRAPNLFGLFANRRSALQALQTIA
DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQETHELRLQQSLERLRVVCWPWQGAIALKEQHPEMTQFHIIH
NWLWLGAVNSLDEATTLVRTPAGFDHDGYKILCKPLLSGNYDIIELDPVNNQEAS
>Mature_295_residues
MVRRLTSSRLEFEAAAIYEYPEHLRSFLSELPTRPGVYLFHGKSDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRI
SWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQRTEVVYAKEVDFSRAPNLFGLFANRRSALQALQTIA
DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQETHELRLQQSLERLRVVCWPWQGAIALKEQHPEMTQFHIIH
NWLWLGAVNSLDEATTLVRTPAGFDHDGYKILCKPLLSGNYDIIELDPVNNQEAS

Specific function: Incises the DNA at the 3' side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than uvrC. Not able to incise the 5' site of a lesion. When a lesion remains because uvrC is not able to induce the 3' incision, cho

COG id: COG0322

COG function: function code L; Nuclease subunit of the excinuclease complex

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrC C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788037, Length=295, Percent_Identity=91.1864406779661, Blast_Score=566, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 33719; Mature: 33719

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRLTSSRLEFEAAAIYEYPEHLRSFLSELPTRPGVYLFHGKSDTMPLYIGKSVNIRSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCHHHH
VLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLK
HHHHHCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHCCHHEEEEE
LDNQRTEVVYAKEVDFSRAPNLFGLFANRRSALQALQTIADEQKLCYGLLGLEPLSRGRA
ECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
CFRSALKRCAGACCGKESQETHELRLQQSLERLRVVCWPWQGAIALKEQHPEMTQFHIIH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCHHHHHHHH
NWLWLGAVNSLDEATTLVRTPAGFDHDGYKILCKPLLSGNYDIIELDPVNNQEAS
HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHEEEEHHHCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MVRRLTSSRLEFEAAAIYEYPEHLRSFLSELPTRPGVYLFHGKSDTMPLYIGKSVNIRSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCHHHH
VLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLK
HHHHHCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHCCHHEEEEE
LDNQRTEVVYAKEVDFSRAPNLFGLFANRRSALQALQTIADEQKLCYGLLGLEPLSRGRA
ECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
CFRSALKRCAGACCGKESQETHELRLQQSLERLRVVCWPWQGAIALKEQHPEMTQFHIIH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCHHHHHHHH
NWLWLGAVNSLDEATTLVRTPAGFDHDGYKILCKPLLSGNYDIIELDPVNNQEAS
HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHEEEEHHHCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]