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The map label for this gene is ycfS [H]

Identifier: 218548643

GI number: 218548643

Start: 1313809

End: 1314789

Strand: Reverse

Name: ycfS [H]

Synonym: EFER_1277

Alternate gene names: 218548643

Gene position: 1314789-1313809 (Counterclockwise)

Preceding gene: 218548644

Following gene: 218548637

Centisome position: 28.65

GC content: 52.29

Gene sequence:

>981_bases
TTGGTGATGATCAAAACGCGTTTTTCTCGCTGGCTAACGTTTTTTACGTTCGCCGCTGCCGTGGCGCTGGCGCTACCGGC
AAAAGCCAACACCTGGCCGCTACCGCCTGCCGGCAGTCGTCTGGTTGGTGAAAATAAATTTCATGTAGTGGAAAATGACG
GTGGTTCTCTGGAAGCCATCGCCAAAAAATATAACGTCGGCTTTCTCGCTCTGTTACAGGCTAACCCTGGCGTTGATCCT
TACGTACCGCGCGCGGGTAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGACGCGCCGCGCGAAGGCATTGTGAT
TAACCTTGCAGAACTGCGTCTCTATTATTATCCGCCAGGAAAAAATTCGGTAACCGTGTATCCCATCGGCATTGGTCAGT
TGGGTGGTGACACGCTGACACCGACAATGGTGACCACCGTTTCTGACAAGCGTGCAAACCCAACCTGGACGCCAACGGCA
AACATTCGCGCGCGGTATAAGGCACAGGGAATTGAGTTGCCTGCGGTAGTTCCGGCTGGACCGGATAACCCAATGGGCCA
TCATGCGATTCGTCTGGCGGCCTATGGCGGCGTTTATTTGCTTCACGGTACGAACGCCGATTTCGGCATTGGCATGCGGG
TAAGTTCTGGCTGTATTCGACTGCGCGATGATGATATTAAAACACTTTTCAGCCACGTTACTCCTGGCACCAAAGTGAAG
ATTATCAATACGCCAATAAAGGCGTCGGCAGAACCAAACGGTGCGCGTCTGGTTGAAGTGCATCAACCACTTTCAGAGAA
AATTGATGATGATCCACAGCTGTTGCCAATCACGCTAAACGGCTCAATGCAGGCGTTTAAAGATGCGGCGCAAACCGACG
CCGATGTCATGCAACATGTGATGGATGTCCGTTCCGGGATGCCAGTGGATGTTCGTCGGCACAATACCGGGAACAATACG
ATTCATAGCCTGGCGCTATAA

Upstream 100 bases:

>100_bases
TTACAAATTATTTGCACTTCCCTGCACTATCCGACACTGTCACCATCCATAATTCATACTTATCTTTTTATTACAATAAC
CTTATATTTATTATGGATTT

Downstream 100 bases:

>100_bases
AAAGTTACATGGCCCGCTAACATTGCGGGCCATTGCTTTTATTGCGGGTATTCCTGCAAAAGCGCATTTAACCTTTCAGC
CATTAAGTCTCCACGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MVMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDP
YVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTA
NIRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSHVTPGTKVK
IINTPIKASAEPNGARLVEVHQPLSEKIDDDPQLLPITLNGSMQAFKDAAQTDADVMQHVMDVRSGMPVDVRRHNTGNNT
IHSLAL

Sequences:

>Translated_326_residues
MVMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDP
YVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTA
NIRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSHVTPGTKVK
IINTPIKASAEPNGARLVEVHQPLSEKIDDDPQLLPITLNGSMQAFKDAAQTDADVMQHVMDVRSGMPVDVRRHNTGNNT
IHSLAL
>Mature_326_residues
MVMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDP
YVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTA
NIRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSHVTPGTKVK
IINTPIKASAEPNGARLVEVHQPLSEKIDDDPQLLPITLNGSMQAFKDAAQTDADVMQHVMDVRSGMPVDVRRHNTGNNT
IHSLAL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=320, Percent_Identity=95, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1787968, Length=300, Percent_Identity=51.6666666666667, Blast_Score=299, Evalue=2e-82,
Organism=Escherichia coli, GI1787040, Length=301, Percent_Identity=51.4950166112957, Blast_Score=292, Evalue=2e-80,
Organism=Escherichia coli, GI1788299, Length=299, Percent_Identity=49.4983277591973, Blast_Score=283, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 35153; Mature: 35153

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAI
CEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHH
AKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYPPG
HHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCC
KNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAG
CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCC
PDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSHVTPGTKVK
CCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEE
IINTPIKASAEPNGARLVEVHQPLSEKIDDDPQLLPITLNGSMQAFKDAAQTDADVMQHV
EEECCCCCCCCCCCCEEEEECCCHHHHCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHH
MDVRSGMPVDVRRHNTGNNTIHSLAL
HHHHCCCCEEEEECCCCCCCEEEECC
>Mature Secondary Structure
MVMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAI
CEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHH
AKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYPPG
HHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCC
KNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAG
CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCC
PDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSHVTPGTKVK
CCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEE
IINTPIKASAEPNGARLVEVHQPLSEKIDDDPQLLPITLNGSMQAFKDAAQTDADVMQHV
EEECCCCCCCCCCCCEEEEECCCHHHHCCCCCCEEEEEECCCHHHHHHHHCCHHHHHHHH
MDVRSGMPVDVRRHNTGNNTIHSLAL
HHHHCCCCEEEEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]