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The map label for this gene is yoaB [H]

Identifier: 218548635

GI number: 218548635

Start: 1306087

End: 1306431

Strand: Reverse

Name: yoaB [H]

Synonym: EFER_1269

Alternate gene names: 218548635

Gene position: 1306431-1306087 (Counterclockwise)

Preceding gene: 218548636

Following gene: 218548634

Centisome position: 28.47

GC content: 49.57

Gene sequence:

>345_bases
ATGACCATTATCCGTATCGACGCCGAAGCCCGCTGGTCTGATGTTGTGATCCACAATAACACCCTCTACTACACTGGTGT
GCCGGAAAACCTTGACGCCGACGCTTTCGAACAGACTGCCAATACCCTTGCGCAAATCGATGCCGTGCTGGAAAAACAGG
GAAGCAGTAAGTCACGCATTCTGGATGCCACCATTTTCCTGGCTGACAAAAGTGATTTTGCAGCAATGAATAAAGCATGG
GATGCATGGGTTGTCGCAGGCCATGCTCCGGTGCGCTGCACGGTACAAGCGGGACTGATGAATCCACAGTATAAAGTTGA
AATTAAGATTGTTGCTGCGGTTTAA

Upstream 100 bases:

>100_bases
ATTGCTGAGTCTTTTTTAACCAATCAACATAAGCAGCAATGACGAAAAGGTTAAGATATGGCAGTCTTAGTGGTTGATGA
ATATATCAATGGAGATTCTC

Downstream 100 bases:

>100_bases
GTTATTCCAGCGCAGAAAATAACCAGATAATACTGACCGATTTTGCAGGATTCGGTCAGTCCTTCGCGAACCCACTCTGT
TATCCCTCGTTCCGGGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MTIIRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLADKSDFAAMNKAW
DAWVVAGHAPVRCTVQAGLMNPQYKVEIKIVAAV

Sequences:

>Translated_114_residues
MTIIRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLADKSDFAAMNKAW
DAWVVAGHAPVRCTVQAGLMNPQYKVEIKIVAAV
>Mature_113_residues
TIIRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLADKSDFAAMNKAWD
AWVVAGHAPVRCTVQAGLMNPQYKVEIKIVAAV

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=95.6140350877193, Blast_Score=227, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12522; Mature: 12391

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIIRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSSKSRI
CEEEEEECCCCEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
LDATIFLADKSDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPQYKVEIKIVAAV
EEEEEEEECCCCCHHHCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEC
>Mature Secondary Structure 
TIIRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSSKSRI
EEEEEECCCCEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
LDATIFLADKSDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPQYKVEIKIVAAV
EEEEEEEECCCCCHHHCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]