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The map label for this gene is ycaD [C]

Identifier: 218548417

GI number: 218548417

Start: 1075786

End: 1076934

Strand: Direct

Name: ycaD [C]

Synonym: EFER_1045

Alternate gene names: 218548417

Gene position: 1075786-1076934 (Clockwise)

Preceding gene: 218548415

Following gene: 218548418

Centisome position: 23.44

GC content: 45.95

Gene sequence:

>1149_bases
ATGTCTATCTATACCCGGCCTGTCATGCTTTTGCTGTCTGGCCTGCTTTTGTTGACCCTGGCGATAGCGGTATTGAACAC
GCTTGTACCGCTATGGCTTGCTCATGAACATCTACCGACATGGCAGGTTGGTATGGTCAGCTCATCTTATTTCACTGGTA
ATCTGGTGGGCACATTGTTGACAGGGTATTTGATCAAACGCCTCGGATTTAACCGTAGTTACTACCTTGCATCTTTGGTT
TTTGCTGCGGGATGTCTGGGCCTGGGCTTAATGATTGGCTTCTGGAGTTGGATGGCCTGGCGTTTTGTTGCGGGCGTTGG
TTGTGCCATGATTTGGGTGGTGGTTGAAAGCGCTCTGATGTGCAGTGGTACATCGCGCAATCGTGGCCGTCTGCTCGCTG
CATATATGATGATCTATTATGTGGGAACGTTTCTGGGGCAGTTGCTGGTTAGTAAAGTTTCTACCGAACTAATGAATGTT
TTGCCCTGGGTTACAGCTCTGATTCTGGCTGGAATTCTGCCTCTGTTATTTACTCGTATCCTGAGTCAGCAAACTGAATC
TCGGAAAACAACATCTATTACCTCAATGCTGAAACTACGCCAGGCGCGATTAGGTGTTAATGGCTGTATTATTTCCGGCA
TAGTGCTTGGCTCTTTATACGGGTTGATGCCACTTTATCTGAACCATCAGGGAATTAGTAATTCCAACATTGGTTTTTGG
ATGGCGGTGTTAGTGAGTGCTGGAATTGTAGGACAGTGGCCAATTGGTCGCCTGGCTGATAAATTTGGCCGGTTGTTAGT
TTTGCGTGTTCAGATTTTTGTGGTGATTTTGGGAAGCATTGCCATGCTTACACATACAGCAATGGCTCCTGCATTATTTA
TCCTCGGCGCTGCTGGGTTTACACTTTACCCTGTCGCTATGGCCTGGTCTTGCGAAAAAGTTTCGCAAGACCAATTAGTT
GCTATGAATCAGGCATTGCTTTTGAGTTACACAATCGGCAGTTTGCTGGGGCCGTCATTTACCGCGATGTTAATGCAGCA
TTATTCCGATAATCTGTTATTTATTATGATTGCCAGCGTATCATTTATTTACCTGCTCATGTTACTTCGTAATGCCAGAC
ATACCTCAAATCCTGTGGCACACGTGTAA

Upstream 100 bases:

>100_bases
AACCGTAAAAAATGCGCTTTGCTAATATTTCGATGATTGACATTGGTTTTAGCAGTGGCATGATGCGCATGAAATTTGAA
ATTCCTCACGGTTTTTATCC

Downstream 100 bases:

>100_bases
GGTTAATCTGACAGAGTATGATCATGATTTTTCATACTCTGTATATGTATTTTCTCTTCGTAACTTGATTTATCTGAAGT
TTTTTCTCTAAGAAATAAAT

Product: MFS family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSIYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAHEHLPTWQVGMVSSSYFTGNLVGTLLTGYLIKRLGFNRSYYLASLV
FAAGCLGLGLMIGFWSWMAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNV
LPWVTALILAGILPLLFTRILSQQTESRKTTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNSNIGFW
MAVLVSAGIVGQWPIGRLADKFGRLLVLRVQIFVVILGSIAMLTHTAMAPALFILGAAGFTLYPVAMAWSCEKVSQDQLV
AMNQALLLSYTIGSLLGPSFTAMLMQHYSDNLLFIMIASVSFIYLLMLLRNARHTSNPVAHV

Sequences:

>Translated_382_residues
MSIYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAHEHLPTWQVGMVSSSYFTGNLVGTLLTGYLIKRLGFNRSYYLASLV
FAAGCLGLGLMIGFWSWMAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNV
LPWVTALILAGILPLLFTRILSQQTESRKTTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNSNIGFW
MAVLVSAGIVGQWPIGRLADKFGRLLVLRVQIFVVILGSIAMLTHTAMAPALFILGAAGFTLYPVAMAWSCEKVSQDQLV
AMNQALLLSYTIGSLLGPSFTAMLMQHYSDNLLFIMIASVSFIYLLMLLRNARHTSNPVAHV
>Mature_381_residues
SIYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAHEHLPTWQVGMVSSSYFTGNLVGTLLTGYLIKRLGFNRSYYLASLVF
AAGCLGLGLMIGFWSWMAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNVL
PWVTALILAGILPLLFTRILSQQTESRKTTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNSNIGFWM
AVLVSAGIVGQWPIGRLADKFGRLLVLRVQIFVVILGSIAMLTHTAMAPALFILGAAGFTLYPVAMAWSCEKVSQDQLVA
MNQALLLSYTIGSLLGPSFTAMLMQHYSDNLLFIMIASVSFIYLLMLLRNARHTSNPVAHV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=382, Percent_Identity=89.0052356020942, Blast_Score=667, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41816; Mature: 41685

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50850 MFS ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAHEHLPTWQVGMVSSSYFTGNLVGTLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHH
TGYLIKRLGFNRSYYLASLVFAAGCLGLGLMIGFWSWMAWRFVAGVGCAMIWVVVESALM
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNVLPWVTALILAGILPLLFTRI
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQQTESRKTTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNSNIGFW
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
MAVLVSAGIVGQWPIGRLADKFGRLLVLRVQIFVVILGSIAMLTHTAMAPALFILGAAGF
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TLYPVAMAWSCEKVSQDQLVAMNQALLLSYTIGSLLGPSFTAMLMQHYSDNLLFIMIASV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHH
SFIYLLMLLRNARHTSNPVAHV
HHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAHEHLPTWQVGMVSSSYFTGNLVGTLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHH
TGYLIKRLGFNRSYYLASLVFAAGCLGLGLMIGFWSWMAWRFVAGVGCAMIWVVVESALM
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNVLPWVTALILAGILPLLFTRI
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQQTESRKTTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNSNIGFW
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
MAVLVSAGIVGQWPIGRLADKFGRLLVLRVQIFVVILGSIAMLTHTAMAPALFILGAAGF
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
TLYPVAMAWSCEKVSQDQLVAMNQALLLSYTIGSLLGPSFTAMLMQHYSDNLLFIMIASV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHH
SFIYLLMLLRNARHTSNPVAHV
HHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA