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The map label for this gene is ybjD [H]

Identifier: 218548398

GI number: 218548398

Start: 1050485

End: 1052143

Strand: Direct

Name: ybjD [H]

Synonym: EFER_1023

Alternate gene names: 218548398

Gene position: 1050485-1052143 (Clockwise)

Preceding gene: 218548396

Following gene: 218548401

Centisome position: 22.89

GC content: 51.78

Gene sequence:

>1659_bases
ATGATTCTTGAACGCGTTGAAATAGTTGGCTTTCGTGGTATCAATCGTCTGTCGCTGATGCTGGAACAAAATAATGTGCT
GATCGGCGAGAACGCATGGGGTAAATCCAGCCTGCTGGATGCGCTGACTCTTTTATTATCTCCTGAATCAGATCTTTACC
ACTTTGACCGCGATGATTTTTGGTTTCCGCCAGGGGATGTTGGTGGGCGGGAACATCATCTGCAAATCATCCTTACTTTT
CGTGAATCATTACCGGGACGGCATCGTGTGCGCCGTTATCAGCCATTGGCTGAGTGTTGGACGCCATGTCGTGATGGCTA
TCACCGGGTTTTCTATCGCCTTGAAGGGGAAAGCCACGATGATGGTAGCGTAATGACCTTGCGTAGCTTCCTCGATGGCG
ACGGACATCCGTTGGCGATTGCTGATATTAACGAGCAGGCGAGGCATCTGGTACGGTTAATGCCAGTGCTTCGTTTGCGT
GATGCCCGCTTTATGCGGCGCATTCGTAATGGCACGGTGCCAAACGTTCCCAATGTGGAAGTTACAGCGCGGGAACTGGA
TTATCTGGCTCGTGAACTGGCTACGCGCCCGCAAAACCTTACTGATGCGCAGATTCGACAGGGGTTGTCGGCAATGGTGC
AACTGCTGGAGCACTATTTTTCCGAGCAAGGCGCAGGGCAGGCGCGCTATCGCCTGATGCGTCGTCGGGGCAATAATGAT
CAGCGTAGTTGGCGTTATCTCGACATCATTAACCGCATGATTGACCGCCCCGGTGGGCGAACGCATCGGGTGATTTTGTT
GGGGCTGTTCTCCACTTTATTGCAGGCGAAAGGAACAATACGGCTGGACAGAGATGCCAGACCCTTGCTGCTGGTGGAAG
ATCCTGAAACGCGCTTGCATCCAATTATGCTGTCGGTCGCCTGGCAGTTACTAAACTTGTTGCCTCTGCAGCGTATTACC
ACCACGAACTCCGGTGAGTTGCTTTCTCTTACACCTGTTGAACATGTGTGCCGCCTGGTGCGTGAGTCTTCACGTGTCGC
TGCATGGCGTCTGGGGCCGGGGGGATTGAGTGCTGAAGATGGCCGACGGATTGCTTTTCATATTCGCTTTAACCGTGCTT
CTTCACTGTTTGCCCGCTGCTGGTTGCTGGTGGAGGGGGAAACAGAAACCTGGGTCATCAATGAACTGGCCCGTCAGTGT
GGTCATCACTTTGACGCTGAGGGGATTAAAGTGATTGAGTTTGCTCAGTCAGGTCTAAAACCGTTGGTGAAATTTGCCCG
TCGAATGGGGATCGAATGGCATGTTCTGGTTGATGGTGATGAGGCCGGGAAAAAATATGCCGCTACAGTGCGCAGCTTGC
TTAACAATGATCGTGATGCCGAACATGAACATTTGACTGCATTGCCCGCACTGGATATGGAACATTTTATGTATCGGCAG
GGCTTTTCTGATGTCTTTCATCGGGTGGCGCAAATTCCGCAAAATGTACCGATGAATATGCGCAAAATTATCTCGAAGGC
GATCCATCGCTCTTCGAAACCCGATCTTGCCATCGAAGTGGCTATGGAAGCCGGACGACGTGGTGTTGATGCAGTGCCAG
TATTGTTTAAGAAAATGTTCTCCAGGGTGGTATGGCTGGCACGCGGCCGGGCAGATTAA

Upstream 100 bases:

>100_bases
TCGGTTGGCTCGCATAACTGTACTGCCGTCACGTTGAAGATGATTTTTTCCAGGTATACTGCTGGTAGCGTTAAGGAGAG
GGATTTTATTTGGGGGATAC

Downstream 100 bases:

>100_bases
GCATGAAATAGCATCGACATCTGTTCTTCAATGGTATCGAGCAAAAGATAGCGCCGACGGTATTCCGCACGTTTTTTGCT
CGCTATTTCTGCCATATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDFWFPPGDVGGREHHLQIILTF
RESLPGRHRVRRYQPLAECWTPCRDGYHRVFYRLEGESHDDGSVMTLRSFLDGDGHPLAIADINEQARHLVRLMPVLRLR
DARFMRRIRNGTVPNVPNVEVTARELDYLARELATRPQNLTDAQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRGNND
QRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTIRLDRDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIT
TTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDRDAEHEHLTALPALDMEHFMYRQ
GFSDVFHRVAQIPQNVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPVLFKKMFSRVVWLARGRAD

Sequences:

>Translated_552_residues
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDFWFPPGDVGGREHHLQIILTF
RESLPGRHRVRRYQPLAECWTPCRDGYHRVFYRLEGESHDDGSVMTLRSFLDGDGHPLAIADINEQARHLVRLMPVLRLR
DARFMRRIRNGTVPNVPNVEVTARELDYLARELATRPQNLTDAQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRGNND
QRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTIRLDRDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIT
TTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDRDAEHEHLTALPALDMEHFMYRQ
GFSDVFHRVAQIPQNVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPVLFKKMFSRVVWLARGRAD
>Mature_552_residues
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDFWFPPGDVGGREHHLQIILTF
RESLPGRHRVRRYQPLAECWTPCRDGYHRVFYRLEGESHDDGSVMTLRSFLDGDGHPLAIADINEQARHLVRLMPVLRLR
DARFMRRIRNGTVPNVPNVEVTARELDYLARELATRPQNLTDAQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRGNND
QRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTIRLDRDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIT
TTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDRDAEHEHLTALPALDMEHFMYRQ
GFSDVFHRVAQIPQNVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPVLFKKMFSRVVWLARGRAD

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=552, Percent_Identity=91.1231884057971, Blast_Score=1022, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 63338; Mature: 63338

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDF
CCCCCEEEECCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCC
WFPPGDVGGREHHLQIILTFRESLPGRHRVRRYQPLAECWTPCRDGYHRVFYRLEGESHD
CCCCCCCCCCCEEEEEEEEEHHCCCCHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCC
DGSVMTLRSFLDGDGHPLAIADINEQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVE
CCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
VTARELDYLARELATRPQNLTDAQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRGNND
EHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
QRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTIRLDRDARPLLLVEDPETRLH
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHH
PIMLSVAWQLLNLLPLQRITTTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPGGLSAED
HHHHHHHHHHHHHCCHHHHCCCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCC
GRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
CCEEEEEEEECCHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDRDAEHEHLTALPALDMEHFMYRQ
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHC
GFSDVFHRVAQIPQNVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPVLFKKMF
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHH
SRVVWLARGRAD
HHHHHHHCCCCC
>Mature Secondary Structure
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDF
CCCCCEEEECCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCEECCCCCC
WFPPGDVGGREHHLQIILTFRESLPGRHRVRRYQPLAECWTPCRDGYHRVFYRLEGESHD
CCCCCCCCCCCEEEEEEEEEHHCCCCHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCC
DGSVMTLRSFLDGDGHPLAIADINEQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVE
CCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
VTARELDYLARELATRPQNLTDAQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRGNND
EHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
QRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTIRLDRDARPLLLVEDPETRLH
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHH
PIMLSVAWQLLNLLPLQRITTTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPGGLSAED
HHHHHHHHHHHHHCCHHHHCCCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCC
GRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
CCEEEEEEEECCHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDRDAEHEHLTALPALDMEHFMYRQ
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHC
GFSDVFHRVAQIPQNVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPVLFKKMF
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHH
SRVVWLARGRAD
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]