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The map label for this gene is ybjR [H]

Identifier: 218548386

GI number: 218548386

Start: 1037031

End: 1037861

Strand: Direct

Name: ybjR [H]

Synonym: EFER_1010

Alternate gene names: 218548386

Gene position: 1037031-1037861 (Clockwise)

Preceding gene: 218548385

Following gene: 218548391

Centisome position: 22.6

GC content: 56.08

Gene sequence:

>831_bases
ATGAGAAGAGTCTTCTGGCTGGTCGCCGCCGCTCTGTTACTGGCAGGGTGTGCAGGCGAAAAAGGCATTGTCGAGAAAGA
GGGATATCAGCTTGATACCCGACGCCAGGCGCAGGCGGCGTATCCGCGCATTAAAGTGCTGGTGATCCACTACACCGCAG
ATGATTTTGATAGTTCGCTGGCGACACTGACCGATAAGCAGGTCAGTTCGCATTATCTTGTCCCTGCGGTGCCACCGCGA
TACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAGGAACTGGCCTGGCATGCGGGGATTAGCGCCTGGCGCGG
GGCAACACGCCTTAACGACACCTCTATTGGCATTGAGCTGGAAAACCGAGGCTGGCAAAAATCGTCGGGGATGAAATATT
TTGCTCCGTTTGAACCGGCACAGATACAGGCGCTCATCCCCCTGGCGAAAGATATTATTACCCGTTATCACATCAAGCCG
GAAAACGTGGTGGCGCATGCGGATATTGCGCCGCAGCGCAAAGATGATCCGGGGCCGTTATTTCCCTGGCAGCAACTGGC
GCAGCAGGGGATTGGTGCCTGGCCGGATGCGCAGCGGGTAAATTTTTACCTTGCCGGGCGTGCGCCACACACGCCAGTAG
ATACCGCATCATTGCTGGAACTGTTGGCGCGCTACGGTTATGACGTAAAACCAGATATGACACCGCGCGAGCAGCGGCGC
GTGATTATGGCGTTCCAGATGCATTTCCGCCCGACGTTATACAACGGCGAAGCGGATGCAGAAACTCAGGCGATTGCCGA
AGCGTTGCTGGAGAAATACGGTCAGGATTAA

Upstream 100 bases:

>100_bases
CTGATGCCGTAGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGT
ACGGCGGTGAAAACACGTCG

Downstream 100 bases:

>100_bases
CGGGGCAGTTTCCCGTGATCGCGCAGCCAGGCAGCAGTTTTCTCAATGCCTTCATCCAGAGTGATGACTGGCTGATAGCC
TAATTCTTCCTGTGCACGCG

Product: cell wall amidase and lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPR
YNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSSGMKYFAPFEPAQIQALIPLAKDIITRYHIKP
ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR
VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD

Sequences:

>Translated_276_residues
MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPR
YNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSSGMKYFAPFEPAQIQALIPLAKDIITRYHIKP
ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR
VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
>Mature_276_residues
MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPR
YNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSSGMKYFAPFEPAQIQALIPLAKDIITRYHIKP
ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR
VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD

Specific function: Unknown

COG id: COG3023

COG function: function code V; Negative regulator of beta-lactamase expression

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787092, Length=276, Percent_Identity=98.5507246376812, Blast_Score=561, Evalue=1e-161,
Organism=Escherichia coli, GI1786300, Length=127, Percent_Identity=39.3700787401575, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 31103; Mature: 31103

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSL
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHH
ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL
HHHHHHHHHCCEECCCCCCCCCCCCCEEEECCCHHHHHHHCHHHHCCCCCCCCCEEEEEE
ENRGWQKSSGMKYFAPFEPAQIQALIPLAKDIITRYHIKPENVVAHADIAPQRKDDPGPL
CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC
FPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR
CHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
EEEEEEHHCCCEEECCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADDFDSSL
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHH
ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL
HHHHHHHHHCCEECCCCCCCCCCCCCEEEECCCHHHHHHHCHHHHCCCCCCCCCEEEEEE
ENRGWQKSSGMKYFAPFEPAQIQALIPLAKDIITRYHIKPENVVAHADIAPQRKDDPGPL
CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC
FPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDVKPDMTPREQRR
CHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
VIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
EEEEEEHHCCCEEECCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]