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The map label for this gene is rhmA [H]

Identifier: 218548302

GI number: 218548302

Start: 937027

End: 937374

Strand: Direct

Name: rhmA [H]

Synonym: EFER_0921

Alternate gene names: 218548302

Gene position: 937027-937374 (Clockwise)

Preceding gene: 218548301

Following gene: 218548307

Centisome position: 20.42

GC content: 50.0

Gene sequence:

>348_bases
ATGTTGGAATCAAGCAAAGTTCCCGCCCTGACACGGGCTATTGATATTCTTAATTTGATTGCCCGCATTGGTCCCTGTAG
TGCTGCGATGAGCATTGACACATTGGGGATCCCTAAAAGCACGGCCTATTTGCTGCTTAATGACCTAAGCGTTCGGCGGA
TCTGCGCTGCGGGTAAAGCGGCTGGTTTTCTGGCTGTGGCTCCTGATATGGCGCAGCAATGCCTGACGTGGGAAGCGAAC
TTTGTCGCTGTTGGCGTTGACACGATGCTCTACAGCGATGCCCTGGTTCAACGACTGGCGATGTTTAAATCAGGCAAAAA
TGGGCCACAAATAAAAGGTAGTTATTAA

Upstream 100 bases:

>100_bases
TCTCCAGTCCACTGGACGAGGAGCGGGATTTAATGCGCTTCACAATTTTACTCCCTCTGAGTGACCAGACTGGTTCCAGT
GTCTAAGACTGGAGTCCAGT

Downstream 100 bases:

>100_bases
TATCAAAGGCCCACGGGGAATTGCACGTGGGCCTGTGTTAATTAGTGGTTATTGGCTGCCAGATCGGCTTCGCTTAGCTG
GGTGGCTGCGAGCACCAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MLESSKVPALTRAIDILNLIARIGPCSAAMSIDTLGIPKSTAYLLLNDLSVRRICAAGKAAGFLAVAPDMAQQCLTWEAN
FVAVGVDTMLYSDALVQRLAMFKSGKNGPQIKGSY

Sequences:

>Translated_115_residues
MLESSKVPALTRAIDILNLIARIGPCSAAMSIDTLGIPKSTAYLLLNDLSVRRICAAGKAAGFLAVAPDMAQQCLTWEAN
FVAVGVDTMLYSDALVQRLAMFKSGKNGPQIKGSY
>Mature_115_residues
MLESSKVPALTRAIDILNLIARIGPCSAAMSIDTLGIPKSTAYLLLNDLSVRRICAAGKAAGFLAVAPDMAQQCLTWEAN
FVAVGVDTMLYSDALVQRLAMFKSGKNGPQIKGSY

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=96, Percent_Identity=69.7916666666667, Blast_Score=129, Evalue=7e-32,
Organism=Escherichia coli, GI1788581, Length=63, Percent_Identity=76.1904761904762, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: NA

Molecular weight: Translated: 12191; Mature: 12191

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESSKVPALTRAIDILNLIARIGPCSAAMSIDTLGIPKSTAYLLLNDLSVRRICAAGKA
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHCCCC
AGFLAVAPDMAQQCLTWEANFVAVGVDTMLYSDALVQRLAMFKSGKNGPQIKGSY
CCEEEECHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLESSKVPALTRAIDILNLIARIGPCSAAMSIDTLGIPKSTAYLLLNDLSVRRICAAGKA
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHCCCC
AGFLAVAPDMAQQCLTWEANFVAVGVDTMLYSDALVQRLAMFKSGKNGPQIKGSY
CCEEEECHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA