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The map label for this gene is yfcD [H]

Identifier: 218548246

GI number: 218548246

Start: 878732

End: 879385

Strand: Direct

Name: yfcD [H]

Synonym: EFER_0864

Alternate gene names: 218548246

Gene position: 878732-879385 (Clockwise)

Preceding gene: 218548245

Following gene: 218548248

Centisome position: 19.15

GC content: 49.85

Gene sequence:

>654_bases
ATGAACAAAGTCATATTGCGCAGGTCGCGATTAATCCGTAATTTACCCCACACAACTAAACGCGCCGTAAGAGCGCAAGC
AACAGAAGGTTTCCTGATAATGGAACAGCGTCATTTGGCAAGTACGGAATGGGTGGATATTGTCAATGAAGATAACGAAG
TCATTGCACAAGCCAGCCGGGAGCAGATGCGAGCACAATGCCTGCGCCACCGTGCGACCTATATCGTCGTGCATGATGGA
ATGGGCAAAATTCTGGTTCAGCGTCGTACCGAGACAAAAGACTTTTTACCTGGAATGCTGGATGCCACCGCTGGTGGTGT
GGTGCAGGCCGATGAACAATTACTGGAATCAGCCCGCCGTGAAGCTGAAGAGGAGTTGGGCATTGCAGGCGTTCCCTTTG
CTGAACATGGACAGTTCTATTTTGAAGATAAAAACTGTCGCGTCTGGGGGGCACTTTTTAGCTGCGTCTCTCACGGGCCA
TTTGCACTACAGGAAGATGAAGTCAGTGAAGTTTGCTGGCTGACACCGGAAGAAATTACTGCCCGGTGCGATGAATTTAC
GCCTGATTCGCTGAAAGCGCTGGCGCTGTGGATGACCCGCAACGCCAGAAGTGATGTAGCAATTCAGGAAAAGCAGGAAG
AAGCTGAAAAATAA

Upstream 100 bases:

>100_bases
ATTTTCCATTTCAACCCCGGTTCGGTAAGCATTCCTAAAGGGGGCTTTCCGGCTAGTTATGGCGTGTTGGATGACAATGT
TTTTCAGGTAATCGCCCTGG

Downstream 100 bases:

>100_bases
GTCAGCAGCTTTCTCGCAAACATAAACTGGGAGCGATCAATTGACGATCGCTCCAGTTGCCGTCTTTAATCCTTTCCAGA
AGTGCTCTTCCTGCTTCGAA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNKVILRRSRLIRNLPHTTKRAVRAQATEGFLIMEQRHLASTEWVDIVNEDNEVIAQASREQMRAQCLRHRATYIVVHDG
MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP
FALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNARSDVAIQEKQEEAEK

Sequences:

>Translated_217_residues
MNKVILRRSRLIRNLPHTTKRAVRAQATEGFLIMEQRHLASTEWVDIVNEDNEVIAQASREQMRAQCLRHRATYIVVHDG
MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP
FALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNARSDVAIQEKQEEAEK
>Mature_217_residues
MNKVILRRSRLIRNLPHTTKRAVRAQATEGFLIMEQRHLASTEWVDIVNEDNEVIAQASREQMRAQCLRHRATYIVVHDG
MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP
FALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNARSDVAIQEKQEEAEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=180, Percent_Identity=93.3333333333333, Blast_Score=330, Evalue=3e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 24698; Mature: 24698

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVILRRSRLIRNLPHTTKRAVRAQATEGFLIMEQRHLASTEWVDIVNEDNEVIAQASR
CCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHHHCCCHHHHHHHHH
EQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARR
HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHH
EAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEIT
HHHHHCCCCCCCHHHCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHH
ARCDEFTPDSLKALALWMTRNARSDVAIQEKQEEAEK
HHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNKVILRRSRLIRNLPHTTKRAVRAQATEGFLIMEQRHLASTEWVDIVNEDNEVIAQASR
CCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHHHCCCHHHHHHHHH
EQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARR
HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHH
EAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEIT
HHHHHCCCCCCCHHHCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHH
ARCDEFTPDSLKALALWMTRNARSDVAIQEKQEEAEK
HHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]