| Definition | Escherichia fergusonii ATCC 35469 chromosome, complete genome. |
|---|---|
| Accession | NC_011740 |
| Length | 4,588,711 |
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The map label for this gene is ypdD [H]
Identifier: 218548168
GI number: 218548168
Start: 801202
End: 803697
Strand: Direct
Name: ypdD [H]
Synonym: EFER_0785
Alternate gene names: 218548168
Gene position: 801202-803697 (Clockwise)
Preceding gene: 218548167
Following gene: 218548172
Centisome position: 17.46
GC content: 55.01
Gene sequence:
>2496_bases ATGTTAACGATTCAATTTCTCTGTCCTTTGCCAAACGGTCTGCATGCTCGTCCGGCGTGGGAACTTAAAGAGCAGTGCAG CCAGTGGCAAAGCGAAATCATCTTCATTAACCATCGCCAGAACGTAAAGGCCGATGCCAAAAGTTCGCTGGCGCTGATTG GCACCGGCACCTTATTTAATGACAGTTGCAGCCTGAACATTAGCGGCAGCGATGAAGAGCAGGCGCGGCGCGTGCTGGAA GAGTACATCCAGGTGCGCTTTATCGACAGCGACAGCGTCCAGCCGACGCAGGCAGAACTGACGGCACATCCACTGCCGCG TTCATTAAGCCGCCTGAACCCTGATTTACTGTACGGCAATGTGCTGGCAAGCGGCGTCGGCGTGGGTACGTTGACCCTGC TACAGAGCAACAGCCTCGACAGTTATCGGGCAATCCCGGCCAGTGCGCAAGACTCCACCTGGCTGGAACACAGCCTGGCA ACGCTTGCCGAGCAACTGAACCAGCAGTTGCGCGAGCGTGACGGCGAAAGCAAAACTATCCTCAGCGCCCATTTATCGCT GATTCAGGATGATGAATTTGCAGGGAATATCCGTCGCCTGATGGCAGAACAGCATCAGGGGCTGGGGGCAGCGATCATCA GCAATATGGAGCAGGTTTGCGACAAACTTTCTGCCTCTGCCAGCGATTATCTGCGCGAGCGGGTCAGCGACATTCGTGAT ATCAGCGAACAATTGCTGCATATCACCTGGCCGGAACTGAAGCCGCGTAATAATCTGGTGCTCGAAAAACCGACCATTCT GGTGGCAGAAGATTTAACCCCTAGCCAGTTTTTGAGCCTCAATTTAAAAAATCTTGCGGGCATGATTCTGGAGAAAACCG GGCGCACCTCGCATACTCTGATTCTGGCCCGCGCCTCGGCGATCCCCGTACTGAGCGGCCTGCCGCTGGATGCCATTGCT CGCTATGCCGGGCAACCGGCGGTGCTTGACGCCCAGTGCGGCGTGCTGGCTATTAATCCTGATGACGCGGTGAGCGGTTA TTATCAGGTTGCGCAGACGCTGGCGGATAAACGCCAGAAACAACAGGCGCAGGCCGCCGCGCAGCTGGCCTATTCCCGTG ATAACAAGCGCATTGATATCGCGGCGAATATTGGCACCGCTCTGGAAGCGCCTGGCGCGTTTGCCAACGGCGCGGAAGGT GTCGGGCTGTTTCGTACCGAAATGCTCTATATGGAGCGCGACAGTGCGCCGGACGAACAGGAACAGTTTGAAGCATACCA ACAGGTGCTACTGGCGGCGGGCGACAAGCCGATTATTTTCCGCACGATGGACATCGGCGGCGATAAAAGCATTCCTTACC TCAACATTCCCCAGGAAGAGAACCCGTTCCTCGGCTATCGCGCGGTACGTATTTACCCGGAATTTGCTGGTCTGTTCCGC ACTCAATTGCGGGCTATTTTGCGCGCTGCCAGTTTCGGTAATGCCCAGTTAATGATCCCAATGGTCCACAGCCTCGATCA GATCTTATGGGTGAAGGGCGAGATCCAAAAAGCGATCGTTGAGCTTAAGCGCGATGGCCTGCGTCATGCAGAGACGATTA CGCTGGGTATCATGGTGGAAGTACCGTCGGTGTGCTACATCATCGACCACTTCTGCGATGAGGTCGATTTCTTCAGTATC GGTTCTAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCTGTATAACCCGATTAC GCCATCGTTCCTGCGCATGTTGCAGCAGATTGTTACCACTGCGCATCAGCGCGGCAAATGGGTAGGTATTTGCGGTGAAC TGGGCGGTGAAAGTCGTTATCTGCCGCTACTGCTTGGACTGGGCCTGGATGAGCTGAGTATGAGTAGCCCGCGCATTCCG GCAGTGAAAAGCCAGCTTCGTCAACTGGATAGCGAGGCGTGTCGGGAATTGGCGCGTCAGGCATGTGAATGCCGCAGTGC GCAGGAAATTGAAGCGTTACTCACCGCCTTTACGCCGGAAGAAGACGTTCGCCCACTGCTGGCGCTGGAGAATATCTTTG TTGATCAGGCCTTTAGCAATAAAGAGCAGGCGATCCAGTTCCTGTGCGGCAACCTTGGCGTTAACGGGCGTACTGAACAT CCGTTTGAGCTGGAAGAGGATGTCTGGCAGCGGGAAGAGATTGTGACCACTGGCGTTGGTTTTGGCGTGGCGATCCCGCA CACCAAATCTCAGTGGATCCGTCATTCCAGTATCAGCATTGCCCGGCTGGTGAAACCGGTTGACTGGCAGTCAGAAATGG GCGAAGTCGAACTGGTGATCATGCTGACGTTGGGTGCTAACGAAGGGATGAACCATGTGAAAGTCTTCTCGCAGCTGGCG CGCAAACTGGTGAATAAAAACTTCCGCCAGTCGTTGTTTGCCGCGCAAGATGCGCAAAGCATCCTGACGCTGCTGGAAAC GGAATTAACCTTCTGA
Upstream 100 bases:
>100_bases GATGCAGCAACTTTTATCTGCCCTTATTCAACGTCTTACGCGTGAGACGGTTGTTCAACTGACGGATTTCAGATGATCTC CTGATTAACCCGGAGCGGTT
Downstream 100 bases:
>100_bases CGTTAGCCCTGAAAACGGGCGCTGTACTCTCCCGGCGTCAGGCCAAACTGACGCCGGAAGACGCGACAAAAATAGTCGCT GTCCGGAAAGCCGCAACGCT
Product: PTS system Hpr component/enzyme I component/enzyme IIA component
Products: NA
Alternate protein names: MTP; Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system enzyme I; Phosphocarrier protein HPr; Protein H; Fructose-like phosphotransferase enzyme IIA component; PTS system fructose-like EIIA component [H]
Number of amino acids: Translated: 831; Mature: 831
Protein sequence:
>831_residues MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEIIFINHRQNVKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLE EYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSNSLDSYRAIPASAQDSTWLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMAEQHQGLGAAIISNMEQVCDKLSASASDYLRERVSDIRD ISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQFLSLNLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIA RYAGQPAVLDAQCGVLAINPDDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEG VGLFRTEMLYMERDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSI GSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIP AVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQAFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLVKPVDWQSEMGEVELVIMLTLGANEGMNHVKVFSQLA RKLVNKNFRQSLFAAQDAQSILTLLETELTF
Sequences:
>Translated_831_residues MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEIIFINHRQNVKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLE EYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSNSLDSYRAIPASAQDSTWLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMAEQHQGLGAAIISNMEQVCDKLSASASDYLRERVSDIRD ISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQFLSLNLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIA RYAGQPAVLDAQCGVLAINPDDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEG VGLFRTEMLYMERDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSI GSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIP AVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQAFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLVKPVDWQSEMGEVELVIMLTLGANEGMNHVKVFSQLA RKLVNKNFRQSLFAAQDAQSILTLLETELTF >Mature_831_residues MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEIIFINHRQNVKADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLE EYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSNSLDSYRAIPASAQDSTWLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMAEQHQGLGAAIISNMEQVCDKLSASASDYLRERVSDIRD ISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQFLSLNLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIA RYAGQPAVLDAQCGVLAINPDDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEG VGLFRTEMLYMERDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSI GSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIP AVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQAFSNKEQAIQFLCGNLGVNGRTEH PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLVKPVDWQSEMGEVELVIMLTLGANEGMNHVKVFSQLA RKLVNKNFRQSLFAAQDAQSILTLLETELTF
Specific function: Multifunctional protein that includes general (non sugar-specific) and sugar-specific components of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylatio
COG id: COG1080
COG function: function code G; Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIA type-2 domain [H]
Homologues:
Organism=Escherichia coli, GI1788726, Length=831, Percent_Identity=98.3152827918171, Blast_Score=1681, Evalue=0.0, Organism=Escherichia coli, GI48994992, Length=834, Percent_Identity=44.9640287769784, Blast_Score=696, Evalue=0.0, Organism=Escherichia coli, GI1788756, Length=575, Percent_Identity=38.9565217391304, Blast_Score=390, Evalue=1e-109, Organism=Escherichia coli, GI1789193, Length=524, Percent_Identity=32.4427480916031, Blast_Score=258, Evalue=1e-69, Organism=Escherichia coli, GI1787994, Length=422, Percent_Identity=26.303317535545, Blast_Score=106, Evalue=6e-24, Organism=Escherichia coli, GI1786951, Length=132, Percent_Identity=28.030303030303, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR005698 - InterPro: IPR000032 - InterPro: IPR004715 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF00381 PTS-HPr; PF00359 PTS_EIIA_2 [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 92242; Mature: 92242
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEIIFINHRQNVKADAKSSLALIGTGTLFN CEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECEEEC DSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGN CCEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHCCCCCHHHHHHCCHHHEEHH VLASGVGVGTLTLLQSNSLDSYRAIPASAQDSTWLEHSLATLAEQLNQQLRERDGESKTI HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH LSAHLSLIQDDEFAGNIRRLMAEQHQGLGAAIISNMEQVCDKLSASASDYLRERVSDIRD HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH ISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQFLSLNLKNLAGMILEKTGRTSHTL HHHHHHEEECCCCCCCCCEEEECCCEEEECCCCHHHHHHCCHHHHHHHHHHCCCCCCEEE ILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPDDAVSGYYQVAQTLADKRQK EEEECCCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH QQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMERDSAPDEQ HHHHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHEECCCCCCHH EQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEEEHHHHHHHH TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVE HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEE VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTT CCHHHHHHHHHHCCCCEEECCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHH AHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQ HHHCCCEEEEECCCCCCCCEEHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH ACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQAFSNKEQAIQFLCGNLGVNGRTEH HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLVKPVDWQSEMGEVELVI CCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEE MLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEIIFINHRQNVKADAKSSLALIGTGTLFN CEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECEEEC DSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTAHPLPRSLSRLNPDLLYGN CCEEEEECCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHCCCCCHHHHHHCCHHHEEHH VLASGVGVGTLTLLQSNSLDSYRAIPASAQDSTWLEHSLATLAEQLNQQLRERDGESKTI HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH LSAHLSLIQDDEFAGNIRRLMAEQHQGLGAAIISNMEQVCDKLSASASDYLRERVSDIRD HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH ISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQFLSLNLKNLAGMILEKTGRTSHTL HHHHHHEEECCCCCCCCCEEEECCCEEEECCCCHHHHHHCCHHHHHHHHHHCCCCCCEEE ILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPDDAVSGYYQVAQTLADKRQK EEEECCCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH QQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLYMERDSAPDEQ HHHHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHEECCCCCCHH EQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVRIYPEFAGLFR HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEEEHHHHHHHH TQLRAILRAASFGNAQLMIPMVHSLDQILWVKGEIQKAIVELKRDGLRHAETITLGIMVE HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEE VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTT CCHHHHHHHHHHCCCCEEECCCCHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHH AHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQ HHHCCCEEEEECCCCCCCCEEHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH ACECRSAQEIEALLTAFTPEEDVRPLLALENIFVDQAFSNKEQAIQFLCGNLGVNGRTEH HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC PFELEEDVWQREEIVTTGVGFGVAIPHTKSQWIRHSSISIARLVKPVDWQSEMGEVELVI CCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEE MLTLGANEGMNHVKVFSQLARKLVNKNFRQSLFAAQDAQSILTLLETELTF EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]