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The map label for this gene is smpA

Identifier: 218547865

GI number: 218547865

Start: 461394

End: 461735

Strand: Reverse

Name: smpA

Synonym: EFER_0456

Alternate gene names: 218547865

Gene position: 461735-461394 (Counterclockwise)

Preceding gene: 218547866

Following gene: 218547862

Centisome position: 10.06

GC content: 50.0

Gene sequence:

>342_bases
ATGCGCTGTAAAACGCTGACTGCTGCAGCAGCAGTACTATTGATGTTGACCGCAGGCTGTTCCACTCTGGAGCGAGTGGT
TTACCGTCCTGACATCAACCAGGGGAACTATCTGACCGCTAACGACGTATCCAAAATACGTGTTGGCATGACGCAACAAC
AAGTTGCGTACGCATTGGGTACACCGCTGATGTCCGATCCATTTGGTACGAATACCTGGTTCTATGTCTTCCGCCAGCAA
CCAGGTCATGAAGGTGTAACGCAGCAAACGCTTACGCTGACCTTTAACAGTAGCGGGGTGTTGACCAACATTGATAACAA
ACCTGCGCTGAGTGGTAACTAA

Upstream 100 bases:

>100_bases
CCGGAAAGCAAAAGGTTTTAAAGTGATGAAAGGTCTATTATCATCGGCATATTACAGATGAGCCACGTACTGCTCGGGCC
CGAAAAGGAATCAAATCACT

Downstream 100 bases:

>100_bases
TAATAAAGTTTCTCTCAAAGACGTTAAAAAAGGTGCTCAATGAGCACCTTTTTTCTGGTTTATTTATTCGCTGATTTTTC
TGCTCGTTGTCTGCGAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQ
PGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN

Sequences:

>Translated_113_residues
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQ
PGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
>Mature_113_residues
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQ
PGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family

Homologues:

Organism=Escherichia coli, GI87082138, Length=113, Percent_Identity=100, Blast_Score=235, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SMPA_ECOL6 (P0A938)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_755021.1
- ProteinModelPortal:   P0A938
- SMR:   P0A938
- EnsemblBacteria:   EBESCT00000045154
- GeneID:   1038872
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c3139
- GeneTree:   EBGT00050000011028
- HOGENOM:   HBG700645
- OMA:   NTWYYIY
- ProtClustDB:   PRK11548
- InterPro:   IPR007450

Pfam domain/function: PF04355 SmpA_OmlA

EC number: NA

Molecular weight: Translated: 12302; Mature: 12302

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALG
CCCCHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCEECCCCCCEEEECCCHHHHHHHHC
TPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALG
CCCCHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCEECCCCCCEEEECCCHHHHHHHHC
TPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157