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The map label for this gene is yahF [H]

Identifier: 218547831

GI number: 218547831

Start: 429647

End: 431194

Strand: Direct

Name: yahF [H]

Synonym: EFER_0419

Alternate gene names: 218547831

Gene position: 429647-431194 (Clockwise)

Preceding gene: 218547830

Following gene: 218547832

Centisome position: 9.36

GC content: 55.62

Gene sequence:

>1548_bases
ATGTCAGTTAAAATAGTCATTAAACCGAATACCTATTTTGATTCTGTCTCGCTGATGTCTATCTCCACACGTGCAAATAA
ACTCGACGGCGTCGAGCAGGCATTTGTGGCGATGGCGACCGAAATGAACAAAGGCGTTCTGAAGAATTTAGGGCTGCTGA
CGCCGGAGCTGGAACAGGCGAAAAACGGCGACCTGATGATTGTCATCAACGGCAAAGCGGGCGCAGACAACGAGCAGTTG
CTGGTGGAGATTGAAGAGCTGTTCAACAGCAAAGCGCAAAGCGGCTCGCATGAAGCGCGTTACGCCACTATTGCCAGCGC
TAAAAAGCATATCCCGGAAAGTAACCTGGCAGTGATTTCGGTTAACGGTCTGTTTGCCGCTCGCGAAGCACGTCAGGCGC
TGCAAAACGATCTTAACGTGATGCTGTTTTCCGATAACGTCTCAGTTGAAGATGAACTGGCGCTCAAGCAACTGGCCCAC
GAAAAAGGGCTGCTGATGATGGGGCCAGACTGCGGCACGGCGATTATCAACGGCGCGGCGCTCTGCTTTGGTAACGCTGT
GCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGTAGCCAGGAACTGAGCGTCCGTATTCATGAATTTGGCG
GCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCTATC
GGGATGCTGGAAAACGATCCGCAAACTGAAATCATTGTACTTATCTCCAAACCGCCCGCGCCTGCGGTGGCCCGCAAAGT
GCTGGAACGCGCACGCGCCTGCCGCAAGCCGGTGGTGGTCTGCTTCCTCGGTCGTGGCGAAACGCCAGTGGATGAGCAGG
GGCTACAGTTTGCCCGCGGCACCAAAGAGGCGGCATTGAAAGCGGTGATGCTCTCCGGCGTGAAACAGGAACATCTCGAG
CTGCATACGCTGAACCAGCCGTTGATTGCGGATGTGCGGGCGCGTCTGCAACCGCGGCAGAAATACATTCGTGGCCTGTT
CTGCGGCGGCACGCTGTGTGACGAAACCATGTTCGCGGTGATGGAAAAACACGGCGATGTCTACAGCAATATCCAGCCCG
ATCCTGAATTCCGCCTGCAAGATATCAACCGCAGCATCAAACATACCTTCCTCGACTTTGGCGATGACGACTTCACCAAC
GGCAAGCCGCATCCAATGATTGACCCCACCAACCGCATCAGTCGCTTGATCGAAGAAGCGCGCGATCCAGAAGTGGCGGT
GATCGTGATGGATTTTGTGCTCGGATTTGGATCGCATGAAGATCCGGTCGGCTCCACCATCGAGGCGATCAAAGAAGCGA
AAGCGATCGCTGCCGCCGAAGGCCGCGAGTTGATCATTCTCGCCTATGTGCTGGGTACCGATCTCGATACGCCATCGTTA
GCACAACAAAGCCAGATGCTGCTTGATGCCGGGGTGATTCTGGCCAGCAGCAGCACCAATACCGGATTGCTGGCGCGTGA
ATTTATTTGCAAAGGGGAGGAAGCCTGA

Upstream 100 bases:

>100_bases
GGAATAGAAAAAATTAAACATATTGGTTCCAGTTCCGGCTGCGACATGCTGTATGGCATGGCTGATGGTTGTGCGCTGAG
CCAAACCTACGGAGGGAATT

Downstream 100 bases:

>100_bases
TGAGCCAGTCACTGTTTAGCCAACCGTTGAACGTTATTAATGTCGGCATCGCTATGTTTAGCGATGATCTGAAAAAGCAG
CATGTAGAAGTAACCCAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKAGADNEQL
LVEIEELFNSKAQSGSHEARYATIASAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAH
EKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAI
GMLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVVCFLGRGETPVDEQGLQFARGTKEAALKAVMLSGVKQEHLE
LHTLNQPLIADVRARLQPRQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTN
GKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSL
AQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA

Sequences:

>Translated_515_residues
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKAGADNEQL
LVEIEELFNSKAQSGSHEARYATIASAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAH
EKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAI
GMLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVVCFLGRGETPVDEQGLQFARGTKEAALKAVMLSGVKQEHLE
LHTLNQPLIADVRARLQPRQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTN
GKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSL
AQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
>Mature_514_residues
SVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKAGADNEQLL
VEIEELFNSKAQSGSHEARYATIASAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHE
KGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIG
MLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVVCFLGRGETPVDEQGLQFARGTKEAALKAVMLSGVKQEHLEL
HTLNQPLIADVRARLQPRQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTNG
KPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSLA
QQSQMLLDAGVILASSSTNTGLLAREFICKGEEA

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli fdrA and some, to bacterial sucD [H]

Homologues:

Organism=Escherichia coli, GI1786513, Length=515, Percent_Identity=97.8640776699029, Blast_Score=1006, Evalue=0.0,
Organism=Escherichia coli, GI1786729, Length=513, Percent_Identity=38.7914230019493, Blast_Score=308, Evalue=6e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003781
- InterPro:   IPR005811
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: NA

Molecular weight: Translated: 55513; Mature: 55381

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQA
CCEEEEECCCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
KNGDLMIVINGKAGADNEQLLVEIEELFNSKAQSGSHEARYATIASAKKHIPESNLAVIS
CCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEE
VNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAA
ECCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHCCHH
LCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAI
HHHCCCEECCCEEEEECCCCCCCEEEEEEEHHCCCHHHHHCCCCCCHHHHHCCEEEEHHH
GMLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVVCFLGRGETPVDEQGLQFARG
HHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCC
TKEAALKAVMLSGVKQEHLELHTLNQPLIADVRARLQPRQKYIRGLFCGGTLCDETMFAV
CHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHEEECCCHHHHHHHHHH
MEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEA
HHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSL
CCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHH
AQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
HHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQA
CEEEEECCCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
KNGDLMIVINGKAGADNEQLLVEIEELFNSKAQSGSHEARYATIASAKKHIPESNLAVIS
CCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEE
VNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAA
ECCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHCCHH
LCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAI
HHHCCCEECCCEEEEECCCCCCCEEEEEEEHHCCCHHHHHCCCCCCHHHHHCCEEEEHHH
GMLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVVCFLGRGETPVDEQGLQFARG
HHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCC
TKEAALKAVMLSGVKQEHLELHTLNQPLIADVRARLQPRQKYIRGLFCGGTLCDETMFAV
CHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHEEECCCHHHHHHHHHH
MEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEA
HHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
RDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSL
CCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHH
AQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
HHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]