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The map label for this gene is ygaD [H]

Identifier: 218547787

GI number: 218547787

Start: 386056

End: 386553

Strand: Direct

Name: ygaD [H]

Synonym: EFER_0374

Alternate gene names: 218547787

Gene position: 386056-386553 (Clockwise)

Preceding gene: 218547785

Following gene: 218547788

Centisome position: 8.41

GC content: 56.63

Gene sequence:

>498_bases
ATGATTGACAGTGAACTGATGCAGTTAAGCGAACAGGTAGGGCAGGCGCTGAAAGCCCGTGGCGCAACCGTAACAACTGC
CGAGTCTTGTACCGGCGGTTGGGTAGCGAAAGTGATTACCGATATTGCCGGTAGTTCCGCCTGGTTTGAACGCGGATTTG
TCACCTACAGTAACGAAGCCAAAGCGCAGATGATCGGCGTACGCGAAGAGACGCTGGCGCAGCATGGCGCGGTGAGCGAA
CCCGTCGTGGTGGAAATGGCGATAGGCGCACTGAAAGCGGCTCGTGCTGATTATGCTGTGTCTGTCAGCGGTATCGCCGG
GCCGGATGGCGGCAGTGAAGAGAAACCTGTCGGCACTGTCTGGTTTGCTTTTGCCACTGCCCGCGGCGAAGGCATTACCC
GCCGGGAATGCTTCAGCGGTGACCGTGATGCGGTGCGTCGTCAGGCTACTGCGTATGCATTGCAAACCTTGTGGCAACAA
TTTCTACAAAACACTTGA

Upstream 100 bases:

>100_bases
TTTTCCGGAACGCAACTCGTAAAATGAATCGCTCGTCCCCATCTTCTGCGGGAAAGTGCTATCTTGTCCGGCATATATTT
TTTGACTGACTGAGGTTGTG

Downstream 100 bases:

>100_bases
TACTGTATGAGCATACAGTATAATTGCTTCAACAGAACATATTGACTATCCGGTATTACCCGGCATGACAGGAGTAAAAA
TGGCTATCGACGAAAACAAA

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MIDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMAIGALKAARADYAVSVSGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT

Sequences:

>Translated_165_residues
MIDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMAIGALKAARADYAVSVSGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT
>Mature_165_residues
MIDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMAIGALKAARADYAVSVSGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=165, Percent_Identity=98.7878787878788, Blast_Score=331, Evalue=1e-92,
Organism=Escherichia coli, GI1787818, Length=146, Percent_Identity=36.986301369863, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17580; Mature: 17580

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA
CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHCCCEEECCCC
KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSVSGIAGPDGGSEEKPVGTV
HHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHH
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
HHEEHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA
CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHCCCEEECCCC
KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSVSGIAGPDGGSEEKPVGTV
HHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHH
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
HHEEHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]