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The map label for this gene is rbsC [H]

Identifier: 218547756

GI number: 218547756

Start: 353479

End: 354555

Strand: Direct

Name: rbsC [H]

Synonym: EFER_0341

Alternate gene names: 218547756

Gene position: 353479-354555 (Clockwise)

Preceding gene: 218547755

Following gene: 218547757

Centisome position: 7.7

GC content: 55.34

Gene sequence:

>1077_bases
ATGAAAACGGGAGCGAAAACCATGACAGACAGAACCCAGTCGCTGGCGGACATTCAGCCAGAGATAAAACTACGCACCAA
AAAAGGCCCAGGGCTTGCGCATATCCTGCTTGAAGGCCGCGCATTTATCGCCTTACTGGTGATTATTGCGGTGTTTTCAT
CACTCTCGCCAAATTACTTTAGCGGCGCAAATTTCCTGACGATGGCCTCGCATGTGGCGATTTTCGGCCTGCCAGCCATT
GGTATGCTGCTGGTGATCCTTAATGGCGGTATCGATCTCTCGGTTGGCTCCACGCTCGGGCTGGCGGGAGTATGTGCCGG
TTTCATGATGCAGGGGATCAATATTGAAGCGCTGGGCGTCGTGCTTTATCTCCCGGTCTGGGCAGTTGCGATTCTGACAC
TTGCCGTCGGCGCACTGGTGGGGCTGGTCAACGGGATATTGATTGCATGGTGTCGGGTACCTGCTTTCGTGGCAACGCTC
GGATCTTTATATGTCGCCCGTGGCATTGCTTTACTCATTACTAACGGCCTGACCTACAACAAGCTCTCGGGCAGTGAATC
TCTGGGAAATACCGGTTTTGACTGGTTAGGATTTAATCGAATCTTCACCGTGCCGATTGGCGTATTGATTCTGGGGATCG
TCGCGCTGGCCTGTGGTTTTTTGTTGAGCAAAACGGCGTTTGGTCGTTGGCTTTATGCCTCTGGTGGTAACGAACGCGCG
GCGGAGCTGTCGGGCGTTCCGGTGAAACGCGTCAAAATCAGCGTCTACGTCCTTTCCGGGATCTGCGCTGCCATGGCCGG
ACTGGTGCTTTCGTCTCAGCTAACCTCTGCCGGTCCGACGGCAGGCACGACTTACGAACTTACCGCCATTGCTGCCGTTG
TGATCGGTGGGGCTGCGCTGACCGGCGGGCGTGGCAACGTGCGCGGCACACTTCTCGGCGCTTTTGTTATCGGTTTTCTC
TCTGACGGTCTGGTCATTATTGGTGTGTCTGCGTATTGGCAGACCGTATTCACGGGAGCGGTGATTGTTCTGGCAGTGCT
GCTCAACACCCTGCAATACGGTCGTCGGGGGCGTTAG

Upstream 100 bases:

>100_bases
TGGTGGTGATGAGTAAAGGACGCATTTCGGCAGTGTTTGATTCCGGGGTAAGCAAAGAGCGCATCATGGCGGCTTCCGGT
GAGTCCGTGGTGGCACAACA

Downstream 100 bases:

>100_bases
TGAGTTTTTATCCAGCACGGAACCCGGTTGTATCCGTTCTGAAATCGTTCCAAAACTTTACCCTAAAATAACGGAGCAAC
AACGCTATGTATAACAAAAG

Product: sugar ABC transporter membrane protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKTGAKTMTDRTQSLADIQPEIKLRTKKGPGLAHILLEGRAFIALLVIIAVFSSLSPNYFSGANFLTMASHVAIFGLPAI
GMLLVILNGGIDLSVGSTLGLAGVCAGFMMQGINIEALGVVLYLPVWAVAILTLAVGALVGLVNGILIAWCRVPAFVATL
GSLYVARGIALLITNGLTYNKLSGSESLGNTGFDWLGFNRIFTVPIGVLILGIVALACGFLLSKTAFGRWLYASGGNERA
AELSGVPVKRVKISVYVLSGICAAMAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGNVRGTLLGAFVIGFL
SDGLVIIGVSAYWQTVFTGAVIVLAVLLNTLQYGRRGR

Sequences:

>Translated_358_residues
MKTGAKTMTDRTQSLADIQPEIKLRTKKGPGLAHILLEGRAFIALLVIIAVFSSLSPNYFSGANFLTMASHVAIFGLPAI
GMLLVILNGGIDLSVGSTLGLAGVCAGFMMQGINIEALGVVLYLPVWAVAILTLAVGALVGLVNGILIAWCRVPAFVATL
GSLYVARGIALLITNGLTYNKLSGSESLGNTGFDWLGFNRIFTVPIGVLILGIVALACGFLLSKTAFGRWLYASGGNERA
AELSGVPVKRVKISVYVLSGICAAMAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGNVRGTLLGAFVIGFL
SDGLVIIGVSAYWQTVFTGAVIVLAVLLNTLQYGRRGR
>Mature_358_residues
MKTGAKTMTDRTQSLADIQPEIKLRTKKGPGLAHILLEGRAFIALLVIIAVFSSLSPNYFSGANFLTMASHVAIFGLPAI
GMLLVILNGGIDLSVGSTLGLAGVCAGFMMQGINIEALGVVLYLPVWAVAILTLAVGALVGLVNGILIAWCRVPAFVATL
GSLYVARGIALLITNGLTYNKLSGSESLGNTGFDWLGFNRIFTVPIGVLILGIVALACGFLLSKTAFGRWLYASGGNERA
AELSGVPVKRVKISVYVLSGICAAMAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGNVRGTLLGAFVIGFL
SDGLVIIGVSAYWQTVFTGAVIVLAVLLNTLQYGRRGR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=316, Percent_Identity=44.9367088607595, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=39.375, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=36.3924050632911, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789992, Length=394, Percent_Identity=32.741116751269, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=33.1230283911672, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=34.3465045592705, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082395, Length=294, Percent_Identity=32.9931972789116, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787793, Length=301, Percent_Identity=36.5448504983389, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787794, Length=327, Percent_Identity=33.6391437308869, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693214, Length=277, Percent_Identity=36.8231046931408, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36934; Mature: 36934

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGAKTMTDRTQSLADIQPEIKLRTKKGPGLAHILLEGRAFIALLVIIAVFSSLSPNYF
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
SGANFLTMASHVAIFGLPAIGMLLVILNGGIDLSVGSTLGLAGVCAGFMMQGINIEALGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHH
VLYLPVWAVAILTLAVGALVGLVNGILIAWCRVPAFVATLGSLYVARGIALLITNGLTYN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCEEC
KLSGSESLGNTGFDWLGFNRIFTVPIGVLILGIVALACGFLLSKTAFGRWLYASGGNERA
CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCH
AELSGVPVKRVKISVYVLSGICAAMAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAAL
HHCCCCCEEHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHE
TGGRGNVRGTLLGAFVIGFLSDGLVIIGVSAYWQTVFTGAVIVLAVLLNTLQYGRRGR
ECCCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTGAKTMTDRTQSLADIQPEIKLRTKKGPGLAHILLEGRAFIALLVIIAVFSSLSPNYF
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCC
SGANFLTMASHVAIFGLPAIGMLLVILNGGIDLSVGSTLGLAGVCAGFMMQGINIEALGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHH
VLYLPVWAVAILTLAVGALVGLVNGILIAWCRVPAFVATLGSLYVARGIALLITNGLTYN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCEEC
KLSGSESLGNTGFDWLGFNRIFTVPIGVLILGIVALACGFLLSKTAFGRWLYASGGNERA
CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCH
AELSGVPVKRVKISVYVLSGICAAMAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAAL
HHCCCCCEEHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHE
TGGRGNVRGTLLGAFVIGFLSDGLVIIGVSAYWQTVFTGAVIVLAVLLNTLQYGRRGR
ECCCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]