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The map label for this gene is vdcC [H]

Identifier: 218547746

GI number: 218547746

Start: 340574

End: 342001

Strand: Direct

Name: vdcC [H]

Synonym: EFER_0331

Alternate gene names: 218547746

Gene position: 340574-342001 (Clockwise)

Preceding gene: 218547745

Following gene: 218547747

Centisome position: 7.42

GC content: 57.14

Gene sequence:

>1428_bases
ATGGCATTTGATGATTTACGCAGCTTTTTACAGGCGCTTGATGACTACGGTCAGTTACTGAAAATCAGTGAAGAAGTGAA
CGCCGAGCCGGATCTGGCAGCCGCTGCCAACGCCACCGGGCGTATCGGCGACGGTGCACCGGCGCTGTGGTTTGACAATA
TTCGCGGCTTTACCGATGCCCGCGTGGCAATGAACACCATCGGCTCCTGGCAGAACCACGCGATTTCCCTCGGCCTGCCG
CCAAACACCCCGGTTAAAAAACAGATTGATGAGTTTATCCGCCGCTGGGATAACTTTCCCATTGCCCCGGAGCGCCGTGC
GAATCCGGTCTGGGCGCAGAACACCGTCGATGGCGACGAGATTAATTTGTTCGATATTCTGCCGCTGTTTCGTTTAAACG
ATGGCGATGGCGGTTTCTATCTCGACAAAGCGTGCGTGGTTTCCCGCGATCCGCTCGACCCGGATAATTTCGGCAAGCAG
AATGTCGGCATCTACCGCATGGAAGTGAAGGGCAAGCGTAAGCTCGGCCTGCAACCGGTGCCGATGCACGATATCGCCCT
GCATCTGCATAAAGCAGAAGAGCGCGGTGAAGATCTGCCGATTGCGATCACGCTCGGTAACGATCCGATCATCACCCTGA
TGGGGGCCACCCCGCTGAAATACGATCAATCAGAGTACGAAATGGCTGGCGCACTACGCGAAAGCCCGTACCCGATCGCC
ACCGCCCCGCTGACCGGTTTTGATGTGCCGTGGGGCTCAGAAGTGATCCTCGAAGGCGTTATCGAAAGCCGTAAACGCGA
GATTGAAGGGCCGTTCGGTGAATTTACCGGCCACTACTCCGGCGGGCGCAACATGACCGTAGTGCGCATCGATAAAGTCT
CTTACCGCACCAAACCGATTTTTGAATCGCTCTATCTCGGTATGCCGTGGACCGAAATCGACTACCTGATGGGGCCAGCC
ACCTGTGTGCCGCTGTATCAGCAACTGAAAGCCGAGTTCCCGGAAGTGCAGGCGGTGAACGCCATGTACACCCACGGCCT
GCTGGCGATTATCTCCACCAAAAAACGCTACGGCGGCTTTGCCCGCGCGGTGGGCCTGCGTGCGATGACCACGCCGCACG
GTCTGGGCTACGTGAAGATGGTGATTATGGTCGATGAAGACGTTGATCCGTTCAACCTGCCGCAGGTGATGTGGGCGCTT
TCGTCGAAAGTGAACCCGGCAGGGGATCTGGTGCAGTTGCCGAATATGTCAGTACTGGAACTCGACCCTGGCTCAAGCCC
GGCGGGGATCACCGATAAGCTGATTATCGACGCCACTACGCCTGTCGCCCCGGACAACCGTGGTCACTACAGCCAGCCGG
TGGTGGACTTACCGGAAACCAAAGCCTGGGCTGAAAAACTGACCGCTATGCTGGCCGCACGTAAATAA

Upstream 100 bases:

>100_bases
TGGTAGCCCGCGTGCTGGATCAATTTGGCCTCGAACATCCTCACGCCAGGCGCTGGCAAGGATTGCCGCAGGCCCGGAAT
TTTTCCCAGGAGAATGAATA

Downstream 100 bases:

>100_bases
GGAGAACAAGATGATTTGTCCACGTTGTGCCGATGAACAGATTGAAGTGATGGCGAAATCGCCGGTGAAAGATGTCTGGA
CGGTCTACCAGTGCCAGCAT

Product: hypothetical protein

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MAFDDLRSFLQALDDYGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPIAPERRANPVWAQNTVDGDEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPIFESLYLGMPWTEIDYLMGPA
TCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWAL
SSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLAARK

Sequences:

>Translated_475_residues
MAFDDLRSFLQALDDYGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPIAPERRANPVWAQNTVDGDEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPIFESLYLGMPWTEIDYLMGPA
TCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWAL
SSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLAARK
>Mature_474_residues
AFDDLRSFLQALDDYGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPP
NTPVKKQIDEFIRRWDNFPIAPERRANPVWAQNTVDGDEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQN
VGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIAT
APLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPIFESLYLGMPWTEIDYLMGPAT
CVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALS
SKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLAARK

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=496, Percent_Identity=27.4193548387097, Blast_Score=171, Evalue=7e-44,
Organism=Saccharomyces cerevisiae, GI6320748, Length=449, Percent_Identity=26.0579064587973, Blast_Score=100, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 52422; Mature: 52290

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDDLRSFLQALDDYGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
CCHHHHHHHHHHHHHHHHHEEHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCHH
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPIAPERRANPVWAQNTVDGDE
HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCC
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
EEHEEECEEEEEECCCCCEEECCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPI
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCHH
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECHHHHCCH
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
HHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEE
LDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLAARK
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFDDLRSFLQALDDYGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
CHHHHHHHHHHHHHHHHHEEHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCHH
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPIAPERRANPVWAQNTVDGDE
HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCC
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
EEHEEECEEEEEECCCCCEEECCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPI
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCHH
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECHHHHCCH
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
HHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEE
LDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLAARK
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA